Crystal structure of the GAIN and HormR domains of brain angiogenesis inhibitor 3 (BAI3)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyFnI-like domain 8091398 3000979 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyZU5 domain-like 8091397 3002026 SCOP2B (2022-06-29)
ASCOP2 FamilyFull GAIN domain-like 8045674 4004608 SCOP2 (2022-06-29)
ASCOP2 FamilyHormone receptor domain 8049575 4003045 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyZU5 domain-like 8091397 3002026 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFnI-like domain 8091398 3000979 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_L1e4dloB4 A: beta barrelsX: Fusion glycoprotein F2H: RIFT-relatedT: double psiF: Ribosomal_L1ECOD (v294.2)
AHRMe4dloA1 A: beta barrelsX: Glycosyl hydrolase domain-likeH: Hormone receptor domain (HRM, Pfam 02793)T: Hormone receptor domain (HRM, Pfam 02793)F: HRMECOD (v294.2)
AGAINe4dloA2 A: beta barrelsX: Glycosyl hydrolase domain-likeH: Stabilizer of iron transporter sufDT: Stabilizer of iron transporter sufDF: GAINECOD (v294.2)
ASUFBDe4dloA3 A: beta barrelsX: Glycosyl hydrolase domain-likeH: Stabilizer of iron transporter sufDT: Stabilizer of iron transporter sufDF: SUFBDECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01825GAIN subdomain B (GPS)GAIN subdomain BThe GPS motif is found in GPCRs, and is the site for auto-proteolysis, so is thus named, GPS [1-4]. The GPS motif is a conserved sequence of ~40 amino acids containing canonical cysteine and tryptophan residues, and is the most highly conserved part ...The GPS motif is found in GPCRs, and is the site for auto-proteolysis, so is thus named, GPS [1-4]. The GPS motif is a conserved sequence of ~40 amino acids containing canonical cysteine and tryptophan residues, and is the most highly conserved part of the domain. In most, if not all, cell-adhesion GPCRs these undergo autoproteolysis in the GPS between a conserved aliphatic residue (usually a leucine) and a threonine, serine, or cysteine residue [5]. In higher eukaryotes this motif is found embedded in the C-terminal beta-stranded part of a GAIN domain - GPCR-Autoproteolysis INducing (GAIN), described as subdomain B, The GAIN-GPS domain/subdomain B adopts a fold in which the GPS motif, at the C-terminus, forms five beta-strands that, together with subdomain A, forms the overall GAIN domain [7]. The GPS motif, evolutionarily conserved from tetrahymena to mammals, is the only extracellular domain shared by all human cell-adhesion GPCRs and PKD proteins, and is the locus of multiple human disease mutations. The GAIN-GPS domain is both necessary and sufficient functionally for autoproteolysis, suggesting an autoproteolytic mechanism whereby the overall GAIN domain fine-tunes the chemical environment in the GPS to catalyse peptide bond hydrolysis [6]. In the cell-adhesion GPCRs and PKD proteins, the GPS motif is always located at the end of their long N-terminal extracellular regions, immediately before the first transmembrane helix of the respective protein.
Domain
A, B
PF02793Hormone receptor domain (HRM)Hormone receptor domain- Family
A, B
PF16489AGRL2-4 GAIN subdomain A (GAIN)AGRL2-4 GAIN subdomain AThis entry describes the GAIN subdomain A primarily found in adhesion G protein-coupled receptors L2-4 (AGRL2-4). It is also found in Latrophilin/CIRL, CELR1, AGRB1-3 and related G-protein -coupled receptors (GPCR). The GAIN domain consists of an N-t ...This entry describes the GAIN subdomain A primarily found in adhesion G protein-coupled receptors L2-4 (AGRL2-4). It is also found in Latrophilin/CIRL, CELR1, AGRB1-3 and related G-protein -coupled receptors (GPCR). The GAIN domain consists of an N-terminal HormR-like domain (IPR053984), followed by the GAIN domain which consists of a stalk (consisting of subdomains A and B) and a GPS motif (IPR000203), followed by a C-terminal transmembrane region (IPR000832) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Brain-specific angiogenesis inhibitor 3