4DQM | pdb_00004dqm

Revealing a marine natural product as a novel agonist for retinoic acid receptors with a unique binding mode and antitumor activity


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyNuclear receptor ligand-binding domain 8038701 3001442 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNuclear receptor ligand-binding domain 8038701 3001442 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CRrf2e4dqmC1 A: a/b three-layered sandwichesX: beta-GraspH: HTHT: winged helix domainF: Rrf2ECOD (v294.1)
AGFPe4dqmA1 A: a/b three-layered sandwichesX: Globin-likeH: Nucleoside diphosphate kinasesT: Nucleoside diphosphate kinasesF: GFPECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.565.10 Mainly Alpha Orthogonal Bundle Retinoid X Receptor Retinoid X ReceptorCATH (4.3.0)
A1.10.565.10 Mainly Alpha Orthogonal Bundle Retinoid X Receptor Retinoid X ReceptorCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00104Ligand-binding domain of nuclear hormone receptor (Hormone_recep)Ligand-binding domain of nuclear hormone receptorThis all helical domain is involved in binding the hormone in these receptors. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
Nuclear receptor coactivator 1
A, C
Retinoic acid receptor alpha

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D
PharosQ15788
A, C
PharosP10276