Annotations: 4F86

Structure analysis of Geranyl diphosphate methyltransferase in complex with GPP and sinefungin

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Methyltr_RsmB-F	e4f86L3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)
K	PGI	e4f86K1	A: alpha arrays	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: PGI	ECOD (v295)
J	Methyltr_RsmB-F	e4f86J3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)
I	Methyltr_RsmB-F	e4f86I3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)
H	PGI	e4f86H1	A: alpha arrays	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: PGI	ECOD (v295)
G	PGI	e4f86G1	A: alpha arrays	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: PGI	ECOD (v295)
F	PGI	e4f86F1	A: alpha arrays	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: PGI	ECOD (v295)
E	Methyltr_RsmB-F	e4f86E3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)
D		e4f86D2	A: alpha arrays	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F:	ECOD (v295)
C	Methyltr_RsmB-F	e4f86C3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)
B	Methyltr_RsmB-F	e4f86B3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)
A	Methyltr_RsmB-F	e4f86A3	A: alpha arrays	X: DEATH domain	H: omega toxin-related	T: Scorpion toxin-like	F: Methyltr_RsmB-F	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
K	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
J	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
I	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
H	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
G	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
F	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
E	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
D	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
C	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Geranyl diphosphate 2-C-methyltransferase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity catalytic activity C-methyltransferase activity S-adenosyl-L-methionine binding sulfur compound binding	methylation metabolic process cellular process terpene metabolic process primary metabolic process hydrocarbon metabolic process isoprenoid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050447	Erg6/SMT methyltransferase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049645	Geranyl diphosphate 2-C-methyltransferase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

4F86 | pdb_00004f86

Structure analysis of Geranyl diphosphate methyltransferase in complex with GPP and sinefungin

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage