4GR5 | pdb_00004gr5

Crystal structure of SlgN1deltaAsub in complex with AMPcPP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	MbtH-like	8101066	3000984	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	AMP-binding enzyme-like	8097570	3001902	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MbtH-like	8101066	3000984	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	AMP-binding enzyme-like	8097570	3001902	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	AMP-binding enzyme-like	8097570	3001902	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MbtH-like	8101066	3000984	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	AMP-binding enzyme-like	8097570	3001902	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MbtH-like	8101066	3000984	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DHquinase_I	e4gr5D3	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: DHquinase_I	ECOD (develop294)
D	E1_FCCH	e4gr5D2	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: E1_FCCH	ECOD (develop294)
C	DHquinase_I	e4gr5C3	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: DHquinase_I	ECOD (develop294)
C	E1_FCCH	e4gr5C1	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: E1_FCCH	ECOD (develop294)
B	DHquinase_I	e4gr5B3	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: DHquinase_I	ECOD (develop294)
B	E1_FCCH	e4gr5B1	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: E1_FCCH	ECOD (develop294)
A	DHquinase_I	e4gr5A3	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: DHquinase_I	ECOD (develop294)
A	E1_FCCH	e4gr5A2	A: alpha bundles	X: Transmembrane heme-binding four-helical bundle	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: E1_FCCH	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.90.820.10	Alpha Beta	Alpha-Beta Complex	Rubredoxin-like	Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	CATH (4.3.0)
D	3.40.50.12780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ANL, N-terminal domain	CATH (4.3.0)
C	3.90.820.10	Alpha Beta	Alpha-Beta Complex	Rubredoxin-like	Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	CATH (4.3.0)
C	3.40.50.12780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ANL, N-terminal domain	CATH (4.3.0)
B	3.90.820.10	Alpha Beta	Alpha-Beta Complex	Rubredoxin-like	Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	CATH (4.3.0)
B	3.40.50.12780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ANL, N-terminal domain	CATH (4.3.0)
A	3.90.820.10	Alpha Beta	Alpha-Beta Complex	Rubredoxin-like	Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	CATH (4.3.0)
A	3.40.50.12780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ANL, N-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Non-ribosomal peptide synthetase	2,3-dihydroxybenzoate-serine ligase activity acid-amino acid ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity transferase activity, transferring one-carbon groups transferase activity methyltransferase activity vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding 2,3-dihydroxybenzoate-serine ligase activity acid-amino acid ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity transferase activity, transferring one-carbon groups transferase activity methyltransferase activity vitamin binding modified amino acid binding binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding	enterobactin biosynthetic process polyketide metabolic process catechol-containing compound metabolic process secondary metabolic process antibiotic biosynthetic process siderophore biosynthetic process antibiotic metabolic process secondary metabolite biosynthetic process siderophore metabolic process lactone biosynthetic process catechol-containing compound biosynthetic process catechol-containing siderophore biosynthetic process macrolide biosynthetic process macrolide metabolic process enterobactin biosynthetic process polyketide metabolic process catechol-containing compound metabolic process secondary metabolic process antibiotic biosynthetic process siderophore biosynthetic process antibiotic metabolic process secondary metabolite biosynthetic process siderophore metabolic process lactone biosynthetic process catechol-containing compound biosynthetic process catechol-containing siderophore biosynthetic process macrolide biosynthetic process macrolide metabolic process biosynthetic process peptide biosynthetic process polyketide biosynthetic process lactone metabolic process phenol-containing compound metabolic process phenol-containing compound biosynthetic process metabolic process cellular process nonribosomal peptide biosynthetic process peptide metabolic process amino acid activation amino acid activation for nonribosomal peptide biosynthetic process amino acid metabolic process primary metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex catalytic complex enterobactin synthetase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR038020	MbtH-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR005153	MbtH-like domain	Domain
A, B, C, D	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A, B, C, D	IPR010071	Amino acid adenylation domain	Domain
A, B, C, D	IPR020845	AMP-binding, conserved site	Conserved Site
A, B, C, D	IPR042099	ANL, N-terminal domain	Homologous Superfamily
A, B, C, D	IPR003043	Uroporphiryn-III C-methyltransferase, conserved site	Conserved Site
A, B, C, D	IPR025110	AMP-binding enzyme, C-terminal domain	Domain
A, B, C, D	IPR000873	AMP-dependent synthetase/ligase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.