4H69 | pdb_00004h69

Crystal Structure of the Allene Oxide Cyclase 2 from Physcomitrella patens complexed with substrate analog

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4h69f1	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	automated matches	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
F	d4h69f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
E	d4h69e1	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	automated matches	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
E	d4h69e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
D	d4h69d1	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	automated matches	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
D	d4h69d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
C	d4h69c1	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	automated matches	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
C	d4h69c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
B	d4h69b1	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	automated matches	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
B	d4h69b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
A	d4h69a1	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	automated matches	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
A	d4h69a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Allene oxide cyclase-like	8088975	3000659	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Allene oxide cyclase-like	8088975	3000659	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Allene oxide cyclase-like	8088975	3000659	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Allene oxide cyclase-like	8088975	3000659	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Allene oxide cyclase-like	8088975	3000659	SCOP2B (2022-06-29)
A	SCOP2 Family	Allene oxide cyclase-like	8088974	4001995	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Allene oxide cyclase-like	8088975	3000659	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e4h69F1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: V-set	F:	ECOD (20:10:01)
E		e4h69E1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: V-set	F:	ECOD (20:10:01)
D		e4h69D1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: V-set	F:	ECOD (20:10:01)
C		e4h69C1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: V-set	F:	ECOD (20:10:01)
B		e4h69B1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: V-set	F:	ECOD (20:10:01)
A		e4h69A1	A: Globin-like	X: Nucleoside diphosphate kinases	H: Nucleoside diphosphate kinases	T: Cupredoxin_1	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
E	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
D	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
C	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
B	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
A	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Allene oxide cyclase	isomerase activity intramolecular oxidoreductase activity allene-oxide cyclase activity cyclase activity catalytic activity	fatty acid metabolic process long-chain fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process jasmonic acid biosynthetic process long-chain fatty acid biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process jasmonic acid metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process fatty acid metabolic process long-chain fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process jasmonic acid biosynthetic process long-chain fatty acid biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process jasmonic acid metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR009410	Allene oxide cyclase	Family
A, B, C, D, E A, B, C, D, E, F	IPR044859	Allene oxide cyclase/Dirigent protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR034871	Allene oxide cyclase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.