4HT6 | pdb_00004ht6

The Structure of a Yeast Dynein Dyn2-Pac11 Complex and Effect on Single Molecule Dynein Motor Activity

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	DLC-like	8082847	3000821	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DLC-like	8082847	3000821	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DLC-like	8082847	3000821	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Nuc_deoxyrib_tr	e4ht6E1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (develop294)
C	Nuc_deoxyrib_tr	e4ht6C1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (develop294)
A	Nuc_deoxyrib_tr	e4ht6A1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.30.740.10	Alpha Beta	2-Layer Sandwich	Protein Inhibitor Of Neuronal Nitric Oxide Synthase	Protein Inhibitor Of Neuronal Nitric Oxide Synthase	CATH (4.3.0)
C	3.30.740.10	Alpha Beta	2-Layer Sandwich	Protein Inhibitor Of Neuronal Nitric Oxide Synthase	Protein Inhibitor Of Neuronal Nitric Oxide Synthase	CATH (4.3.0)
A	3.30.740.10	Alpha Beta	2-Layer Sandwich	Protein Inhibitor Of Neuronal Nitric Oxide Synthase	Protein Inhibitor Of Neuronal Nitric Oxide Synthase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E	PF01221	Dynein light chain type 1 (Dynein_light)	Dynein light chain type 1		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F	WD repeat-containing protein PAC11	protein binding binding dynein heavy chain binding dynein light chain binding	establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle cellular component organization or biogenesis microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of localization establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation cellular process microtubule-based process cytoskeleton organization organelle transport along microtubule transport nucleus localization intracellular transport nuclear migration along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement nuclear migration	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle cytoplasmic microtubule intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle cytoplasmic microtubule intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex
A, C, E	Dynein light chain 1, cytoplasmic	protein binding binding dynein intermediate chain binding	establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle cellular component organization or biogenesis microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of localization establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation cellular process microtubule-based process cytoskeleton organization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport organelle transport along microtubule nucleus localization intracellular transport nuclear migration along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement nuclear migration establishment of protein localization protein transport intracellular protein localization nucleocytoplasmic transport nuclear transport nuclear pore organization protein-containing complex organization pore complex assembly cellular component biogenesis nuclear pore complex assembly nucleus organization cellular component assembly protein-containing complex assembly	peroxisomal importomer complex protein-containing complex transporter complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system membrane-enclosed lumen peroxisomal importomer complex protein-containing complex transporter complex membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen polymeric cytoskeletal fiber intracellular membraneless organelle cytoplasmic microtubule cytoskeleton membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton nuclear protein-containing complex nuclear pore cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F	IPR019775	WD40 repeat, conserved site	Conserved Site
B, D, F	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B, D, F	IPR001680	WD40 repeat	Repeat
B, D, F	IPR050687	Dynein axonemal intermediate chain 1/2/3/4	Family
B, D, F	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, C, E	IPR037177	Dynein light chain superfamily	Homologous Superfamily
A, C, E	IPR001372	Dynein light chain, type 1/2	Family
A, C, E	IPR019763	Dynein light chain, type 1/2, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.