4I1D | pdb_00004i1d

The crystal structure of an ABC transporter substrate-binding protein from Bradyrhizobium japonicum USDA 110

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd4i1dd1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Dd4i1dd2 Artifacts Tags Tags Tags N-terminal Tags (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Cd4i1dc1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Cd4i1dc2 Artifacts Tags Tags Tags N-terminal Tags (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Bd4i1db1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Bd4i1db2 Artifacts Tags Tags Tags N-terminal Tags (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Ad4i1da1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)
Ad4i1da2 Artifacts Tags Tags Tags N-terminal Tags (Bradyrhizobium diazoefficiens USDA 110 ) [TaxId: 224911 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DGtf3_Ce4i1dD2 A: alpha bundlesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: Gtf3_CECOD (develop294)
DThymidylat_synte4i1dD1 A: alpha bundlesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: Thymidylat_syntECOD (develop294)
Ce4i1dC1 A: alpha bundlesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F:ECOD (develop294)
BGtf3_Ce4i1dB2 A: alpha bundlesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: Gtf3_CECOD (develop294)
BEryCIII-like_Ne4i1dB3 A: alpha bundlesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: EryCIII-like_NECOD (develop294)
Ae4i1dA1 A: alpha bundlesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F:ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
C3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
B3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF13416Bacterial extracellular solute-binding protein (SBP_bac_8)Bacterial extracellular solute-binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
ABC transporter substrate-binding protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR006059Bacterial-type extracellular solute-binding proteinFamily