Structure of Sr-substituted photosystem II
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| W [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| K [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| EA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| L [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| FA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| I [auth J] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| CA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| BA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| AA [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| Z [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| Y [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| X [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| V [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| S [auth Z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| MA [auth z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| Q [auth Y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| KA [auth y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| N [auth T] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| HA [auth t] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2 Family | PsbO-like | 8097549 | 4002770 | SCOP2 (2022-06-29) |
| M [auth O] | SCOP2 Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2 (2022-06-29) |
| GA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| DA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
| J [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Sushi | e4il6C1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| W [auth c] | Sigma70_r2,Sigma70_ner | e4il6c1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Sigma70_r2,Sigma70_ner | ECOD (develop294) |
| K [auth L] | Sushi | e4il6L1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| EA [auth l] | V-set | e4il6l1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| L [auth M] | Sushi | e4il6M1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| FA [auth m] | V-set | e4il6m1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| I [auth J] | Sushi | e4il6J1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| CA [auth j] | V-set | e4il6j1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| H [auth I] | Sushi | e4il6I1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| BA [auth i] | V-set | e4il6i1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| G [auth H] | Sushi | e4il6H1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| AA [auth h] | V-set | e4il6h1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| Z [auth f] | ABC_tran | e4il6f1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (develop294) |
| F | Sushi | e4il6F1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| Y [auth e] | V-set | e4il6e1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| E | Sushi | e4il6E1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| X [auth d] | HORMA | e4il6d2 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: HORMA | ECOD (develop294) |
| D | Sushi | e4il6D1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| T [auth R] | PsbY | e4il6R1 | A: alpha bundles | X: OB-fold | H: HupF/HypC-like | T: HupF/HypC-like | F: PsbY | ECOD (develop294) |
| V [auth b] | Formyl_trans_N | e4il6b1 | A: alpha bundles | X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | F: Formyl_trans_N | ECOD (develop294) |
| B | preSET_CXC | e4il6B1 | A: alpha bundles | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: preSET_CXC | ECOD (develop294) |
| S [auth Z] | Sushi | e4il6Z1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| MA [auth z] | V-set | e4il6z1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| R [auth X] | CENP-S | e4il6X1 | A: alpha bundles | X: HTH | H: HTH | T: winged helix domain | F: CENP-S | ECOD (develop294) |
| LA [auth x] | V-set | e4il6x1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| Q [auth Y] | CENP-S | e4il6Y1 | A: alpha bundles | X: HTH | H: HTH | T: winged helix domain | F: CENP-S | ECOD (develop294) |
| KA [auth y] | ABC_tran | e4il6y1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (develop294) |
| P [auth V] | Sushi | e4il6V1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| JA [auth v] | V-set | e4il6v1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| O [auth U] | Sushi | e4il6U1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| IA [auth u] | V-set | e4il6u1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| M [auth O] | Sushi | e4il6O1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| GA [auth o] | V-set | e4il6o1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| DA [auth k] | V-set | e4il6k1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: V-set | ECOD (develop294) |
| J [auth K] | Sushi | e4il6K1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
| U [auth a] | HORMA | e4il6a2 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: HORMA | ECOD (develop294) |
| A | Sushi | e4il6A1 | A: alpha bundles | X: Ribonuclease H-like | H: Ribonuclease H-like | T: Ribonuclease H-like | F: Sushi | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| T [auth R] | PF06298 | Photosystem II protein Y (PsbY) (PsbY) | Photosystem II protein Y (PsbY) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem II, Sr-substituted |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| FA [auth m], L [auth M] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| BA [auth i], H [auth I] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| MA [auth z], S [auth Z] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| HA [auth t], N [auth T] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |














