Annotations: 4JML

Crystal structure of the TolB(P201C)-ColicinE9 TBE peptide(A33C) complex.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TolB N-terminal domain-like	8042388	3000482	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YWTD domain-like	8042387	3000494	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PK_Tyr_Ser-Thr	e4jmlA1	A: alpha arrays	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PK_Tyr_Ser-Thr	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10070	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TolB, N-terminal domain	CATH (4.3.0)
A	2.120.10.30	Mainly Beta	6 Propeller	Neuraminidase	TolB, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07676	TolB beta propeller domain (PD40)	TolB beta propeller domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein TolB	protein binding binding protein domain specific binding protein-containing complex binding	cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process cellular process cell cycle cell division cellular component organization or biogenesis cell cycle process protein import localization establishment of protein localization cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process cellular process cell cycle cell division cellular component organization or biogenesis cell cycle process protein import localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization nitrogen compound transport bacteriocin transport membrane organization regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation membrane invagination regulation of membrane invagination cellular response to nitrogen compound cellular response to stimulus response to bacteriocin response to stimulus response to oxygen-containing compound response to nitrogen compound response to antibiotic cellular response to oxygen-containing compound cellular response to antibiotic cellular response to chemical stimulus cellular response to bacteriocin response to chemical	cellular anatomical structure membrane cell division site extracellular region periplasmic space outer membrane-bounded periplasmic space cell envelope protein-containing complex
B [auth E]	Colicin-E9	protein binding binding protein domain specific binding endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity	-	intracellular anatomical structure cellular anatomical structure extrachromosomal circular DNA extrachromosomal DNA protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A	IPR011659	TolB-like, beta-propeller domain	Domain
A	IPR007195	TolB, N-terminal	Domain
A	IPR014167	Tol-Pal system protein TolB	Family
B [auth E]	IPR024575	Cloacin/colicin	Family
B [auth E]	IPR024566	Colicin, receptor domain	Domain
B [auth E]	IPR016128	Pyosin/cloacin translocation domain	Domain
B [auth E]	IPR036302	Pyosin/cloacin translocation domain superfamily	Homologous Superfamily
B [auth E]	IPR037146	Colicin/pyocin, DNase domain superfamily	Homologous Superfamily
B [auth E]	IPR044925	His-Me finger superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.