Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth D] | d4jnxd1 | Alpha and beta proteins (a+b) | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | automated matches | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| B [auth D] | d4jnxd2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| A | d4jnxa1 | Alpha and beta proteins (a+b) | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | automated matches | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| A | d4jnxa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth D] | tRNA-synt_1b | e4jnxD1 | A: a/b three-layered sandwiches | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: tRNA-synt_1b | ECOD (v294.1) |
| A | tRNA-synt_1b | e4jnxA1 | A: a/b three-layered sandwiches | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: tRNA-synt_1b | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B [auth D] | 3.30.390.180 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
| A | 3.30.390.180 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth B], D [auth G] | 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3' | - | - | - |
| A, B [auth D] | RNA silencing suppressor p19 |
|
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B [auth D] | IPR036131 | Tombusvirus P19 superfamily | Homologous Superfamily |
| A, B [auth D] | IPR004905 | Tombusvirus p19 core protein | Family |
