4MLF
Crystal structure for the complex of thrombin mutant D102N and hirudin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | d4mlfd_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Leech antihemostatic proteins | Hirudin-like | Hirudin | Medicinal leech (Hirudo medicinalis ) [TaxId: 6421 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | Hirudin | e4mlfD1 | A: few secondary structure elements | X: Leech antihemostatic protein (From Topology) | H: Leech antihemostatic protein (From Topology) | T: Leech antihemostatic protein | F: Hirudin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
C [auth D] | 2.70.10.10 | Mainly Beta | Distorted Sandwich | Thrombin Inhibitor (Hirudin) | Chain I | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09396 | Thrombin light chain (Thrombin_light) | Thrombin light chain | Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleave ... | Domain | |
PF00089 | Trypsin (Trypsin) | Trypsin | - | Domain | |
C [auth D] | PF00713 | Hirudin (Hirudin) | Hirudin | - | Domain |