4OQ8 | pdb_00004oq8

Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4oq8a_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Satellite viruses Satellite viruses STNV coat protein (Satellite tobacco mosaic virus ) [TaxId: 12881 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilySatellite viruses 8040781 3000942 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae4oq8A1 A: DP domainX: DP domainH: DP domainT: DUF5074F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.220 Mainly Beta Sandwich Jelly Rolls Satellite virus coat domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RNA (5'-R(P*UP*U)-3')---
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')---
RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')---
Coat protein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR037164Satellite virus coat domain superfamilyHomologous Superfamily