4P4H

Caught-in-action signaling complex of RIG-I 2CARD domain and MAVS CARD domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
E	SCOP2 Family	CARD-like	8046076	4000308	SCOP2 (2022-06-29)
E	SCOP2 Family	CARD-like	8092817	4000308	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	DEATH domain	8092818	3000069	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	DEATH domain	8092819	3000069	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DEATH domain	8092818	3000069	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DEATH domain	8092819	3000069	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
M [auth N]	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
N [auth O]	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
U [auth M]	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
J	SCOP2 Family	CARD-like	8046075	4000308	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	DEATH domain	8092816	3000069	SCOP2 (2022-06-29)
O [auth P]	SCOP2B Superfamily	DEATH domain	8092816	3000069	SCOP2B (2022-06-29)
P [auth S]	SCOP2B Superfamily	Ubiquitin-like	8066187	3000157	SCOP2B (2022-06-29)
Q [auth T]	SCOP2B Superfamily	Ubiquitin-like	8066187	3000157	SCOP2B (2022-06-29)
T [auth X]	SCOP2B Superfamily	Ubiquitin-like	8066187	3000157	SCOP2B (2022-06-29)
R [auth U]	SCOP2B Superfamily	Ubiquitin-like	8066187	3000157	SCOP2B (2022-06-29)
S [auth W]	SCOP2B Superfamily	Ubiquitin-like	8066187	3000157	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CARD_2_1	e4p4hA2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
A	CARD_2	e4p4hA1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
E	CARD_2_1	e4p4hE2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
E	CARD_2	e4p4hE1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
B	CARD_2_1	e4p4hB2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
B	CARD_2	e4p4hB1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
C	CARD_2_1	e4p4hC2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
C	CARD_2	e4p4hC1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
D	CARD_2_1	e4p4hD2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
D	CARD_2	e4p4hD1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
F	CARD_2_1	e4p4hF2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
F	CARD_2	e4p4hF1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
G	CARD_2_1	e4p4hG2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
G	CARD_2	e4p4hG1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
H	CARD_2_1	e4p4hH2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_1	ECOD (1.6)
H	CARD_2	e4p4hH1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2	ECOD (1.6)
I	CARD_2_2	e4p4hI1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
K	CARD_2_2	e4p4hK1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
L	CARD_2_2	e4p4hL1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
M [auth N]	CARD_2_2	e4p4hN1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
N [auth O]	CARD_2_2	e4p4hO1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
U [auth M]	CARD_2_2	e4p4hM1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
J	CARD_2_2	e4p4hJ1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
O [auth P]	CARD_2_2	e4p4hP1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD_2_2	ECOD (1.6)
P [auth S]	ubiquitin_1	e4p4hS1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ubiquitin_1	ECOD (1.6)
Q [auth T]	ubiquitin_1	e4p4hT1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ubiquitin_1	ECOD (1.6)
T [auth X]	ubiquitin_1	e4p4hX1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ubiquitin_1	ECOD (1.6)
R [auth U]	ubiquitin_1	e4p4hU1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ubiquitin_1	ECOD (1.6)
S [auth W]	ubiquitin_1	e4p4hW1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ubiquitin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
E	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
B	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
C	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
D	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
F	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
G	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
H	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
I	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
K	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
L	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
M [auth N]	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
N [auth O]	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
U [auth M]	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
J	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
O [auth P]	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF16739	Caspase recruitment domain (CARD_2)	Caspase recruitment domain	In the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain [1].	Domain
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	PF16739	Caspase recruitment domain (CARD_2)	Caspase recruitment domain	In the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain [1].	Domain
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Probable ATP-dependent RNA helicase DDX58	ATP-dependent activity, acting on DNA catalytic activity, acting on DNA DNA translocase activity catalytic activity, acting on a nucleic acid chromatin extrusion motor activity catalytic activity ATP-dependent activity ATP-dependent H3-H4 histone complex chaperone activity catalytic activity, acting on a protein histone chaperone activity ATP-dependent chromatin remodeler activity H3-H4 histone complex chaperone activity protein carrier chaperone ATP-dependent histone chaperone activity ATP-dependent activity, acting on DNA catalytic activity, acting on DNA DNA translocase activity catalytic activity, acting on a nucleic acid chromatin extrusion motor activity catalytic activity ATP-dependent activity ATP-dependent H3-H4 histone complex chaperone activity catalytic activity, acting on a protein histone chaperone activity ATP-dependent chromatin remodeler activity H3-H4 histone complex chaperone activity protein carrier chaperone ATP-dependent histone chaperone activity molecular carrier activity RNA binding double-stranded RNA binding binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on RNA helicase activity RNA helicase activity ATP-dependent activity, acting on RNA ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding identical protein binding cohesin loader activity DNA clamp loader activity ATP-dependent H2AZ histone chaperone activity single-stranded RNA binding molecular transducer activity pattern recognition receptor activity signaling receptor activity guanyl nucleotide binding GTP binding guanyl ribonucleotide binding DNA binding double-stranded DNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides cation binding transition metal ion binding zinc ion binding metal ion binding	cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process RIG-I signaling pathway regulation of cell motility regulation of locomotion regulation of cell migration cell migration cell motility locomotion response to cytokine positive regulation of response to cytokine stimulus response to peptide regulation of response to cytokine stimulus response to chemical multicellular organismal process positive regulation of interleukin-8 production cytokine production regulation of cytokine production regulation of multicellular organismal process interleukin-8 production positive regulation of multicellular organismal process positive regulation of cytokine production regulation of interleukin-8 production regulation of immune effector process positive regulation of leukocyte mediated immunity regulation of myeloid leukocyte mediated immunity myeloid leukocyte mediated immunity dendritic cell cytokine production leukocyte mediated immunity regulation of cytokine production involved in immune response immune effector process regulation of leukocyte mediated immunity myeloid dendritic cell cytokine production positive regulation of myeloid leukocyte mediated immunity positive regulation of production of molecular mediator of immune response regulation of production of molecular mediator of immune response positive regulation of dendritic cell cytokine production regulation of myeloid dendritic cell cytokine production positive regulation of myeloid leukocyte cytokine production involved in immune response regulation of dendritic cell cytokine production positive regulation of immune effector process myeloid leukocyte cytokine production cytokine production involved in immune response production of molecular mediator of immune response positive regulation of myeloid dendritic cell cytokine production positive regulation of cytokine production involved in immune response regulation of defense response to virus defense response to virus positive regulation of defense response to virus by host regulation of defense response to virus by host response to virus positive regulation of DNA-templated transcription RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process primary metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription interferon-alpha production regulation of interferon-alpha production positive regulation of type I interferon production type I interferon production positive regulation of interferon-alpha production regulation of type I interferon production interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production response to dsRNA response to nitrogen compound response to exogenous dsRNA cellular response to nitrogen compound cellular response to dsRNA cellular response to exogenous dsRNA cellular response to chemical stimulus regulation of interferon-beta production interferon-beta production positive regulation of interferon-beta production antiviral innate immune response granulocyte macrophage colony-stimulating factor production positive regulation of protein metabolic process positive regulation of granulocyte macrophage colony-stimulating factor production protein metabolic process regulation of granulocyte macrophage colony-stimulating factor production regulation of protein metabolic process detection of virus regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production regulation of type III interferon production type III interferon production	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol ruffle cell leading edge plasma membrane membrane intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol ruffle cell leading edge plasma membrane membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane cell-cell junction apical junction complex bicellular tight junction tight junction anchoring junction cell junction protein-containing complex ribonucleoprotein complex
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	Mitochondrial antiviral-signaling protein	protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity protein binding binding RIG-I binding signaling receptor binding molecular condensate scaffold activity kinase binding enzyme binding protein kinase binding CARD domain binding protein domain specific binding identical protein binding	cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response regulation of cellular component organization regulation of organelle organization cellular component organization peroxisome organization regulation of peroxisome organization organelle organization cellular component organization or biogenesis chemokine (C-C motif) ligand 5 production multicellular organismal process positive regulation of chemokine (C-C motif) ligand 5 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of chemokine production regulation of gene expression biosynthetic process positive regulation of gene expression chemokine production positive regulation of chemokine production positive regulation of multicellular organismal process regulation of chemokine (C-C motif) ligand 5 production metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production regulation of type I interferon-mediated signaling pathway negative regulation of biological process response to cytokine interferon-mediated signaling pathway cellular response to type I interferon cellular response to cytokine stimulus negative regulation of immune response regulation of response to cytokine stimulus negative regulation of response to cytokine stimulus response to chemical negative regulation of response to external stimulus negative regulation of defense response response to type I interferon negative regulation of response to biotic stimulus negative regulation of signaling negative regulation of cell communication cytokine-mediated signaling pathway negative regulation of cellular process cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cytokine-mediated signaling pathway negative regulation of signal transduction response to peptide negative regulation of immune system process negative regulation of cytokine-mediated signaling pathway type I interferon-mediated signaling pathway negative regulation of type I interferon-mediated signaling pathway negative regulation of innate immune response positive regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of DNA-binding transcription factor activity regulation of DNA-templated transcription IP-10 production positive regulation of IP-10 production regulation of IP-10 production cellular response to nitrogen compound cellular response to dsRNA cellular response to exogenous dsRNA response to dsRNA response to nitrogen compound response to exogenous dsRNA cellular response to chemical stimulus positive regulation of type I interferon-mediated signaling pathway positive regulation of response to cytokine stimulus positive regulation of cytokine-mediated signaling pathway defense response to bacterium response to bacterium regulation of interferon-beta production interferon-beta production positive regulation of type I interferon production type I interferon production positive regulation of interferon-beta production regulation of type I interferon production protein localization regulation of localization cellular localization establishment of protein localization nitrogen compound transport regulation of protein localization nucleocytoplasmic transport transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of establishment of protein localization regulation of protein localization to nucleus positive regulation of protein transport localization import into nucleus regulation of protein import into nucleus cellular macromolecule localization establishment of localization in cell protein import into nucleus positive regulation of intracellular transport regulation of intracellular transport regulation of transport positive regulation of protein localization to nucleus regulation of establishment of protein localization positive regulation of protein import into nucleus intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport establishment of localization establishment of protein localization to organelle positive regulation of transport regulation of cellular localization protein transport macromolecule localization protein localization to organelle positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport positive regulation of interleukin-8 production interleukin-8 production regulation of interleukin-8 production regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly cellular component biogenesis cellular component assembly inflammasome-mediated signaling pathway canonical inflammasome complex assembly positive regulation of pattern recognition receptor signaling pathway positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of pattern recognition receptor signaling pathway NLRP3 inflammasome complex assembly inflammatory response positive regulation of cellular component organization regulation of cytoplasmic pattern recognition receptor signaling pathway regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly protein-containing complex assembly protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis defense response to virus antiviral innate immune response response to virus regulation of immune effector process positive regulation of leukocyte mediated immunity regulation of myeloid leukocyte mediated immunity myeloid leukocyte mediated immunity dendritic cell cytokine production leukocyte mediated immunity regulation of cytokine production involved in immune response immune effector process regulation of leukocyte mediated immunity myeloid dendritic cell cytokine production positive regulation of myeloid leukocyte mediated immunity positive regulation of production of molecular mediator of immune response regulation of production of molecular mediator of immune response positive regulation of dendritic cell cytokine production regulation of myeloid dendritic cell cytokine production positive regulation of myeloid leukocyte cytokine production involved in immune response regulation of dendritic cell cytokine production positive regulation of immune effector process myeloid leukocyte cytokine production cytokine production involved in immune response production of molecular mediator of immune response positive regulation of myeloid dendritic cell cytokine production positive regulation of cytokine production involved in immune response protein localization to mitochondrion negative regulation of viral genome replication viral life cycle negative regulation of viral process regulation of viral process regulation of viral life cycle viral genome replication viral process regulation of viral genome replication regulation of defense response to virus positive regulation of defense response to virus by host regulation of defense response to virus by host positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process positive regulation of protein modification process regulation of phosphate metabolic process phosphate-containing compound metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process macromolecule modification regulation of phosphorus metabolic process regulation of phosphorylation regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production positive regulation of DNA-templated transcription transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process interferon-alpha production regulation of interferon-alpha production positive regulation of interferon-alpha production	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle envelope mitochondrial envelope organelle membrane organelle outer membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle envelope mitochondrial envelope organelle membrane organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane peroxisome microbody membrane peroxisomal membrane microbody protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	Ubiquitin-60S ribosomal protein L40	structural molecule activity structural constituent of ribosome protein tag activity molecular tag activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding	macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis protein ubiquitination post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal biosynthetic process cytoplasmic translation translation gene expression macromolecule biosynthetic process	membrane-bounded organelle cellular anatomical structure organelle vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery membrane-bounded organelle cellular anatomical structure organelle vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane endocytic vesicle membrane endocytic vesicle vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome cytosolic ribosome membraneless organelle intracellular membraneless organelle ribosome endosome membrane endosome mitochondrial membrane mitochondrion organelle outer membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane protein-containing complex ribosomal subunit cytosolic large ribosomal subunit ribonucleoprotein complex large ribosomal subunit

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR021673	RIG-I-like receptor, C-terminal regulatory domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR042145	RIG-I, CARD domain repeat 2	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011545	DEAD/DEAH box helicase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038557	RIG-I-like receptor, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001650	Helicase, C-terminal domain-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR051363	RIG-I-like Receptor (RLR) Helicase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041204	RIG-I-like receptor, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR031964	Caspase recruitment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011029	Death-like domain superfamily	Homologous Superfamily
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	IPR031964	Caspase recruitment domain	Domain
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	IPR011029	Death-like domain superfamily	Homologous Superfamily
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	IPR052787	Mitochondrial antiviral-signaling domain-containing protein	Family
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	IPR042144	IPS1, CARD domain	Domain
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR019954	Ubiquitin conserved site	Conserved Site
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR038587	Large ribosomal subunit protein eL40 superfamily	Homologous Superfamily
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR050158	Ubiquitin and ubiquitin-like	Family
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR000626	Ubiquitin-like domain	Domain
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR019956	Ubiquitin domain	Domain
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR001975	Large ribosomal subunit protein eL40 domain	Domain
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: O95786	psoriasis Singleton-Merten syndrome 2 influenza hepatitis C virus infection pilocytic astrocytoma pustulosis palmaris et plantaris tuberculosis atopic eczema dermatomyositis glioblastoma juvenile dermatomyositis malignant glioma ovarian cancer singleton-Merten dysplasia Sjogren syndrome psoriasis Singleton-Merten syndrome 2 influenza hepatitis C virus infection pilocytic astrocytoma pustulosis palmaris et plantaris tuberculosis atopic eczema dermatomyositis glioblastoma juvenile dermatomyositis malignant glioma ovarian cancer singleton-Merten dysplasia Sjogren syndrome cutaneous lupus erythematosus Disease Exacerbation intellectual disability lung cancer microphthalmia with limb anomalies pancreatic intraductal papillary-mucinous neoplasm Singleton-Merten syndrome 1 systemic lupus erythematosus cystic fibrosis hepatocellular carcinoma interstitial cystitis malignant ependymoma osteosarcoma
I, J, K, L, M [auth N], I, J, K, L, M [auth N], N [auth O], O [auth P], U [auth M]	Pharos: Q7Z434	astrocytic tumor glioblastoma microphthalmia with limb anomalies Pick disease ulcerative colitis cystic fibrosis influenza oligodendroglioma psoriasis Gaucher disease malignant ependymoma osteosarcoma sinusitis
P [auth S], Q [auth T], R [auth U], S [auth W], T [auth X]	Pharos: P62987	attention deficit hyperactivity disorder, inattentive type heart disease dental caries lung cancer gastroesophageal reflux disease plasma cell myeloma