4PDK
FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GntR | e4pdkA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
A | FadR_C | e4pdkA2 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FadR_C | ECOD (1.6) |
B | GntR | e4pdkB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
B | FadR_C | e4pdkB1 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FadR_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07840 | FadR C-terminal domain (FadR_C) | FadR C-terminal domain | - | Family | |
PF00392 | Bacterial regulatory proteins, gntR family (GntR) | Bacterial regulatory proteins, gntR family | This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins include the following sub-fam ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028374 | FadR, C-terminal domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR000524 | Transcription regulator HTH, GntR | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR014178 | Fatty acid response transcription factor FadR | Family | |
IPR008920 | Transcription regulator FadR/GntR, C-terminal | Homologous Superfamily |