4QT8 | pdb_00004qt8

Crystal Structure of RON Sema-PSI-IPT1 extracellular domains in complex with MSP beta-chain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4qt8d_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4qt8c_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Trypsin_1	e4qt8D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin_1	ECOD (1.6)
C	Trypsin_1	e4qt8C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin_1	ECOD (1.6)
B [auth A]	TIG_3	e4qt8A3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: TIG_3	ECOD (1.6)
B [auth A]	Sema_2	e4qt8A2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Sema_2	ECOD (1.6)
B [auth A]	PSI_1	e4qt8A1	A: few secondary structure elements	X: Trefoil/Plexin domain-like (From Topology)	H: Trefoil/Plexin domain-like (From Topology)	T: Trefoil/Plexin domain-like	F: PSI_1	ECOD (1.6)
A [auth B]	TIG_3	e4qt8B3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: TIG_3	ECOD (1.6)
A [auth B]	Sema_2	e4qt8B1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Sema_2	ECOD (1.6)
A [auth B]	PSI_1	e4qt8B2	A: few secondary structure elements	X: Trefoil/Plexin domain-like (From Topology)	H: Trefoil/Plexin domain-like (From Topology)	T: Trefoil/Plexin domain-like	F: PSI_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
C	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
B [auth A]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A [auth B]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00089	Trypsin (Trypsin)	Trypsin		Domain
A [auth B], B [auth A]	PF01833	IPT/TIG domain (TIG)	IPT/TIG domain	This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family d ...	This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members.	Domain
A [auth B], B [auth A]	PF01437	Plexin repeat (PSI)	Plexin repeat	-	Family
A [auth B], B [auth A]	PF01403	Sema domain (Sema)	Sema domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Hepatocyte growth factor-like protein	protein tyrosine kinase binding protein binding binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding	cellular response to stimulus cell surface receptor signaling pathway via STAT regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT regulation of cell communication cellular response to stimulus cell surface receptor signaling pathway via STAT regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT regulation of cell communication cellular process signal transduction regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of primary metabolic process regulation of cAMP-dependent protein kinase activity phosphate-containing compound metabolic process protein metabolic process phosphorus metabolic process protein modification process protein phosphorylation phosphorylation regulation of protein metabolic process primary metabolic process regulation of protein kinase activity regulation of macromolecule metabolic process regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorylation regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process monosaccharide metabolic process negative regulation of small molecule metabolic process negative regulation of biological process gluconeogenesis negative regulation of gluconeogenesis regulation of small molecule metabolic process negative regulation of cellular process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis regulation of carbohydrate biosynthetic process glucose metabolic process proteolysis	cellular anatomical structure extracellular region extracellular space
A [auth B], B [auth A]	Macrophage-stimulating protein receptor	molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups macrophage colony-stimulating factor receptor activity protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups macrophage colony-stimulating factor receptor activity protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein binding enzyme binding	localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont localization import into cell transport phagocytosis cellular process endocytosis establishment of localization vesicle-mediated transport biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus sexual reproduction reproductive process fertilization single fertilization cellular response to stimulus positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of response to stimulus regulation of cell communication phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling cell migration cell motility cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation positive regulation of phosphorylation regulation of catalytic activity regulation of transferase activity positive regulation of phosphate metabolic process regulation of MAP kinase activity regulation of primary metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process phosphorus metabolic process protein modification process positive regulation of protein phosphorylation positive regulation of MAP kinase activity protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation positive regulation of MAPK cascade regulation of protein metabolic process primary metabolic process regulation of MAPK cascade regulation of molecular function positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of molecular function positive regulation of protein modification process protein metabolic process positive regulation of protein kinase activity positive regulation of catalytic activity regulation of protein kinase activity regulation of macromolecule metabolic process MAPK cascade regulation of phosphorylation developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway response to virus	cell surface cellular anatomical structure cell periphery plasma membrane membrane protein-containing complex receptor complex intracellular anatomical structure actin filament bundle intracellular membraneless organelle actin cytoskeleton actomyosin intracellular organelle cytoskeleton cell surface cellular anatomical structure cell periphery plasma membrane membrane protein-containing complex receptor complex intracellular anatomical structure actin filament bundle intracellular membraneless organelle actin cytoskeleton actomyosin intracellular organelle cytoskeleton organelle membraneless organelle stress fiber contractile actin filament bundle membrane-bounded organelle vacuole cytoplasm intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR043575	Macrophage stimulating protein	Family
C, D	IPR013806	Kringle-like fold	Homologous Superfamily
C, D	IPR038178	Kringle superfamily	Homologous Superfamily
C, D	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
C, D	IPR050759	Serine proteases and regulators with kringle domains	Family
C, D	IPR001314	Peptidase S1A, chymotrypsin family	Family
C, D	IPR024174	Hepatocyte growth factor/Macrophage stimulatory protein	Family
C, D	IPR001254	Serine proteases, trypsin domain	Domain
C, D	IPR018056	Kringle, conserved site	Conserved Site
C, D	IPR003609	PAN/Apple domain	Domain
C, D	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
C, D	IPR000001	Kringle	Domain
A [auth B], B [auth A]	IPR017441	Protein kinase, ATP binding site	Binding Site
A [auth B], B [auth A]	IPR002909	IPT domain	Domain
A [auth B], B [auth A]	IPR008266	Tyrosine-protein kinase, active site	Active Site
A [auth B], B [auth A]	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A [auth B], B [auth A]	IPR039413	RON, Sema domain	Domain
A [auth B], B [auth A]	IPR016201	PSI domain	Domain
A [auth B], B [auth A]	IPR016244	Tyrosine-protein kinase, HGF/MSP receptor	Family
A [auth B], B [auth A]	IPR000719	Protein kinase domain	Domain
A [auth B], B [auth A]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth B], B [auth A]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A [auth B], B [auth A]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR002165	Plexin repeat	Repeat
A [auth B], B [auth A]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth B], B [auth A]	IPR050122	Receptor Tyrosine Kinase	Family
A [auth B], B [auth A]	IPR036352	Sema domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR001627	Sema domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: P26927	sclerosing cholangitis ulcerative colitis Crohn disease primary sclerosing cholangitis breast carcinoma Neoplasm Metastasis breast cancer Crohn's colitis drug-induced liver injury ileocolitis endogenous depression inflammatory bowel disease prostate carcinoma endometriosis
A [auth B], B [auth A]	Pharos: Q04912	osteosarcoma nasopharyngeal carcinoma, susceptibility to, 3 nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type Chemically-Induced Liver Toxicity drug-induced liver injury gastroesophageal reflux disease interstitial cystitis malignant mesothelioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast cancer endogenous depression lung adenocarcinoma osteosarcoma nasopharyngeal carcinoma, susceptibility to, 3 nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type Chemically-Induced Liver Toxicity drug-induced liver injury gastroesophageal reflux disease interstitial cystitis malignant mesothelioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast cancer endogenous depression lung adenocarcinoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma esophageal adenocarcinoma malignant colon neoplasm