4R9V | pdb_00004r9v

Crystal structure of sialyltransferase from photobacterium damselae, residues 113-497 corresponding to the gt-b domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4r9va1	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	automated matches	automated matches	(Photobacterium damselae ) [TaxId: 38293 ],	SCOPe (2.08)
A	d4r9va2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Photobacterium damselae ) [TaxId: 38293 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Sialyltransferase-like	8085116	4003276	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Type B glycosyltransferase-like	8085117	3001586	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UPAR_LY6	e4r9vA1	A: alpha bundles	X: Repetitive alpha hairpins	H: Snake toxin-like	T: Snake toxin-like	F: UPAR_LY6	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.11120	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain	CATH (4.3.0)
A	3.40.50.11110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Sialyltransferase, C-terminal GT-B Rossman nucleotide-binding domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sialyltransferase 0160	glycosyltransferase activity transferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis localization transport phosphate ion transport establishment of localization inorganic anion transport regulation of biological process regulation of cellular process phosphate ion homeostasis intracellular phosphate ion homeostasis cellular homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis localization transport phosphate ion transport establishment of localization inorganic anion transport regulation of biological process regulation of cellular process negative regulation of metabolic process biological regulation negative regulation of biological process negative regulation of phosphate metabolic process negative regulation of phosphorus metabolic process negative regulation of cellular process phosphate-containing compound metabolic process metabolic process cellular process regulation of phosphorus metabolic process phosphorus metabolic process regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038078	PhoU-like domain superfamily	Homologous Superfamily
A	IPR026022	PhoU domain	Domain
A	IPR021574	Sialyltransferase PMO188	Family
A	IPR028366	PhoU	Family
A	IPR043078	Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.