4TSZ | pdb_00004tsz

Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth M]	Pkinase	e4tszM1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
W [auth L]	Pkinase	e4tszL1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
U [auth K]	Pkinase	e4tszK1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
S [auth J]	Pkinase	e4tszJ1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
Q [auth I]	Pkinase	e4tszI1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
O [auth H]	Pkinase	e4tszH1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
M [auth G]	Pkinase	e4tszG1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
K [auth F]	Pkinase	e4tszF1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
I [auth E]	Pkinase	e4tszE1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
G [auth D]	Pkinase	e4tszD1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
EA [auth P]	Pkinase	e4tszP1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
E [auth C]	Pkinase	e4tszC1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
CA [auth O]	Pkinase	e4tszO1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
C [auth B]	Pkinase	e4tszB1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
AA [auth N]	Pkinase	e4tszN1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)
A	Pkinase	e4tszA1	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: Pkinase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Y [auth M]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
W [auth L]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
U [auth K]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
S [auth J]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
Q [auth I]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
O [auth H]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
M [auth G]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
K [auth F]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
I [auth E]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
G [auth D]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
EA [auth P]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
E [auth C]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
CA [auth O]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
C [auth B]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
AA [auth N]	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)
A	3.10.150.10	Alpha Beta	Roll	DNA Polymerase III	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	PF02768	DNA polymerase III beta subunit, C-terminal domain (DNA_pol3_beta_3)	DNA polymerase III beta subunit, C-terminal domain	A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	PF02767	DNA polymerase III beta subunit, central domain (DNA_pol3_beta_2)	DNA polymerase III beta subunit, central domain	A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	PF00712	DNA polymerase III beta subunit, N-terminal domain (DNA_pol3_beta)	DNA polymerase III beta subunit, N-terminal domain	A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], FA [auth 6], H [auth T], J [auth U], L [auth V], N [auth X], P [auth Y], R [auth Z], T [auth 0], V [auth 1], X [auth 2], Z [auth 3]	ACE-GLN-ALC-ASP-LEU-ZCL peptide	-	-	-
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	DNA polymerase III subunit beta	catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding hydrolase activity, acting on ester bonds nuclease activity 3'-5' exonuclease activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding hydrolase activity, acting on ester bonds nuclease activity 3'-5' exonuclease activity hydrolase activity exonuclease activity identical protein binding protein binding	DNA-templated DNA replication primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA strand elongation DNA replication metabolic process cellular process DNA strand elongation involved in DNA replication macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm transferase complex, transferring phosphorus-containing groups DNA polymerase III complex protein-containing complex catalytic complex transferase complex DNA polymerase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	IPR046938	DNA clamp superfamily	Homologous Superfamily
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	IPR022637	DNA polymerase III, beta sliding clamp, central	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	IPR001001	DNA polymerase III, beta sliding clamp	Family
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	IPR022634	DNA polymerase III, beta sliding clamp, N-terminal	Domain
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H], Q [auth I], S [auth J], U [auth K], W [auth L], Y [auth M]	IPR022635	DNA polymerase III, beta sliding clamp, C-terminal	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], FA [auth 6], H [auth T], J [auth U], L [auth V], N [auth X], P [auth Y], R [auth Z], T [auth 0], V [auth 1], X [auth 2], Z [auth 3]	ACE	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], FA [auth 6], H [auth T], J [auth U], L [auth V], N [auth X], P [auth Y], R [auth Z], T [auth 0], V [auth 1], X [auth 2], Z [auth 3]	ALC	Parent Component: ALA RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354
B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], B [auth Q], BA [auth 4], D [auth R], DA [auth 5], F [auth S], FA [auth 6], H [auth T], J [auth U], L [auth V], N [auth X], P [auth Y], R [auth Z], T [auth 0], V [auth 1], X [auth 2], Z [auth 3]	ZCL	Parent Component: PHE RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.