Annotations: 4TW1

Crystal structure of the octameric pore complex of the Staphylococcus aureus Bi-component Toxin LukGH

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4tw1p_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
N	d4tw1n_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
L	d4tw1l_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
J	d4tw1j_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
H	d4tw1h_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
F	d4tw1f_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
D	d4tw1d_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
B	d4tw1b_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
O	d4tw1o_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
M	d4tw1m_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
K	d4tw1k_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
I	d4tw1i_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
G	d4tw1g_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
E	d4tw1e_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
C	d4tw1c_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)
A	d4tw1a_	Membrane and cell surface proteins and peptides	Leukocidin-like	Leukocidin-like	automated matches	automated matches	(Staphylococcus aureus subsp. aureus USA300_TCH1516 ) [TaxId: 451516 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Leukocidin-like	8074050	3000256	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	Chal_sti_synt_C	e4tw1P1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
N	Chal_sti_synt_C	e4tw1N1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
L	Chal_sti_synt_C	e4tw1L1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
J	Chal_sti_synt_C	e4tw1J1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
H	Chal_sti_synt_C	e4tw1H1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
F	Chal_sti_synt_C	e4tw1F1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
D	Chal_sti_synt_C	e4tw1D1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
B	Chal_sti_synt_C	e4tw1B1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
O	Chal_sti_synt_C	e4tw1O1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
M	Chal_sti_synt_C	e4tw1M1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
K	Chal_sti_synt_C	e4tw1K1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
I	Chal_sti_synt_C	e4tw1I1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
G	Chal_sti_synt_C	e4tw1G1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
E	Chal_sti_synt_C	e4tw1E1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
C	Chal_sti_synt_C	e4tw1C1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)
A	Chal_sti_synt_C	e4tw1A1	A: alpha arrays	X: jelly-roll	H: Double-stranded beta-helix	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: Chal_sti_synt_C	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
N	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
L	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
J	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
H	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
F	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
D	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
B	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
O	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
M	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
K	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
I	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
G	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
E	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
C	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
A	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P	Possible leukocidin subunit	-	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure extracellular region
A, C, E, G, I A, C, E, G, I, K, M, O	Possible leukocidin subunit	-	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P	IPR016183	Leukocidin/Hemolysin toxin	Domain
B, D, F, H, J B, D, F, H, J, L, N, P	IPR036435	Leukocidin/porin MspA superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P	IPR003963	Bi-component toxin, staphylococci	Family
A, C, E, G, I A, C, E, G, I, K, M, O	IPR016183	Leukocidin/Hemolysin toxin	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR036435	Leukocidin/porin MspA superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR003963	Bi-component toxin, staphylococci	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes	LukGH octamer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.