4UF6
UCH-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG2778 | e4uf6A1 | A: alpha duplicates or obligate multimers | X: L27 domain (From Topology) | H: L27 domain (From Topology) | T: L27 domain | F: KOG2778 | ECOD (1.6) |
A | Peptidase_C12 | e4uf6A2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C12 | ECOD (1.6) |
D | KOG2778 | e4uf6D2 | A: alpha duplicates or obligate multimers | X: L27 domain (From Topology) | H: L27 domain (From Topology) | T: L27 domain | F: KOG2778 | ECOD (1.6) |
D | Peptidase_C12 | e4uf6D1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C12 | ECOD (1.6) |
G | KOG2778 | e4uf6G2 | A: alpha duplicates or obligate multimers | X: L27 domain (From Topology) | H: L27 domain (From Topology) | T: L27 domain | F: KOG2778 | ECOD (1.6) |
G | Peptidase_C12 | e4uf6G1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C12 | ECOD (1.6) |
J | KOG2778 | e4uf6J2 | A: alpha duplicates or obligate multimers | X: L27 domain (From Topology) | H: L27 domain (From Topology) | T: L27 domain | F: KOG2778 | ECOD (1.6) |
J | Peptidase_C12 | e4uf6J1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Peptidase_C12 | ECOD (1.6) |
B | ubiquitin_1 | e4uf6B1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
E | ubiquitin_1 | e4uf6E1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
H | ubiquitin_1 | e4uf6H1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
K | ubiquitin_1 | e4uf6K1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18031 | Ubiquitin carboxyl-terminal hydrolases (UCH_C) | Ubiquitin carboxyl-terminal hydrolases | This is the C-terminal domain found in eukaryotic UCH37 proteins (also known as Ubiquitin carboxyl-terminal hydrolase isozyme L5, UCHL5). UCH37 is a subunit of two complexes: INO80, which performs ATP-dependent sliding of nucleosomes for transcriptio ... | Domain | |
PF01088 | Ubiquitin carboxyl-terminal hydrolase, family 1 (Peptidase_C12) | Ubiquitin carboxyl-terminal hydrolase, family 1 | - | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033837 | Ubiquitinyl hydrolase-L5 | Domain | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR017390 | Ubiquitinyl hydrolase, UCH37 type | Family | |
IPR001578 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase | Domain | |
IPR041507 | Peptidase C12, C-terminal domain | Domain | |
IPR036959 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily | Homologous Superfamily | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR025220 | NFRKB winged helix-like domain | Domain | |
IPR044867 | DEUBAD domain | Domain | |
IPR038106 | NFRKB winged helix-like domain superfamily | Homologous Superfamily | |
IPR024867 | Nuclear factor related to kappa-B-binding protein | Family |