4UJ4
Crystal structure of human Rab11-Rabin8-FIP3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057254 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057254 | 3002022 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057254 | 3002022 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057254 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Eferin C-derminal domain-like | 8039617 | 3000568 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Eferin C-derminal domain-like | 8039617 | 3000568 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Eferin C-derminal domain-like | 8039617 | 3000568 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | KOG4324 | e4uj4B1 | A: alpha bundles | X: Rabin8 C-terminal domain (From Topology) | H: Rabin8 C-terminal domain (From Topology) | T: Rabin8 C-terminal domain | F: KOG4324 | ECOD (1.6) |
E | KOG4324 | e4uj4E1 | A: alpha bundles | X: Rabin8 C-terminal domain (From Topology) | H: Rabin8 C-terminal domain (From Topology) | T: Rabin8 C-terminal domain | F: KOG4324 | ECOD (1.6) |
H | KOG4324 | e4uj4H1 | A: alpha bundles | X: Rabin8 C-terminal domain (From Topology) | H: Rabin8 C-terminal domain (From Topology) | T: Rabin8 C-terminal domain | F: KOG4324 | ECOD (1.6) |
K | KOG4324 | e4uj4K1 | A: alpha bundles | X: Rabin8 C-terminal domain (From Topology) | H: Rabin8 C-terminal domain (From Topology) | T: Rabin8 C-terminal domain | F: KOG4324 | ECOD (1.6) |
A | Ras | e4uj4A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D | Ras | e4uj4D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
G | Ras | e4uj4G1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
J | Ras | e4uj4J1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF09457 | FIP domain (RBD-FIP) | FIP domain | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009449 | GDP/GTP exchange factor Sec2, N-terminal | Domain | |
IPR040351 | Guanine nucleotide exchange factor RAB3IL/RAB3IP/Sec2 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR050209 | Rab GTPases family involved in membrane trafficking | Family | |
IPR037245 | FIP-RBD, C-terminal domain superfamily | Homologous Superfamily | |
IPR002048 | EF-hand domain | Domain | |
IPR011992 | EF-hand domain pair | Homologous Superfamily | |
IPR051977 | Rab11-interacting regulator of endocytosis and ciliogenesis | Family | |
IPR019018 | Rab-binding domain FIP-RBD | Domain |