4UUV | pdb_00004uuv

Structure of the DNA binding ETS domain of human ETV4 in complex with DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Winged helix DNA-binding domain	8093034	3000034	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4uuvA1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
D		e4uuvD1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
G		e4uuvG1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
J		e4uuvJ1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
M		e4uuvM1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
P		e4uuvP1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
S		e4uuvS1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)
V		e4uuvV1	A: Alpha-beta plaits	X: HTH	H: winged helix domain	T: Ets	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
D	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
G	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
J	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
M	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
P	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
S	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
V	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G, J, M A, D, G, J, M, P, S, V	PF00178	Ets-domain (Ets)	Ets-domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G, J, M A, D, G, J, M, P, S, V	ETS TRANSLOCATION VARIANT 4	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	developmental process cellular developmental process cell differentiation cellular process multicellular organismal process positive regulation of keratinocyte differentiation regulation of cellular process regulation of developmental process regulation of epidermal cell differentiation epidermis development positive regulation of biological process regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation developmental process cellular developmental process cell differentiation cellular process multicellular organismal process positive regulation of keratinocyte differentiation regulation of cellular process regulation of developmental process regulation of epidermal cell differentiation epidermis development positive regulation of biological process regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation positive regulation of developmental process multicellular organism development positive regulation of cell differentiation anatomical structure development regulation of multicellular organismal process positive regulation of cellular process epithelium development regulation of biological process regulation of multicellular organismal development epidermal cell differentiation animal organ development biological regulation positive regulation of epidermis development tissue development positive regulation of epithelial cell differentiation skin development keratinocyte differentiation positive regulation of multicellular organismal process regulation of epidermis development regulation of keratinocyte differentiation positive regulation of epidermal cell differentiation RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen chromosome nucleoplasm chromatin
B, E, H, K, N B, E, H, K, N, Q, T, W	5'-D(APCPCPGPGPAPAPGPTPGP)-3'	-	-	-
C, F, I, L, O C, F, I, L, O, R, U	5'-D(APCPTPTPCPCPGPGPTPCP)-3'	-	-	-
X	5'-D(APCPTPTPCPCPGPGPTPCP)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G, J, M A, D, G, J, M, P, S, V	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, D, G, J, M A, D, G, J, M, P, S, V	IPR000418	Ets domain	Domain
A, D, G, J, M A, D, G, J, M, P, S, V	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, D, G, J, M A, D, G, J, M, P, S, V	IPR006715	PEA3-type ETS-domain transcription factor, N-terminal	Domain
A, D, G, J, M A, D, G, J, M, P, S, V	IPR046328	ETS family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D, G, J, M A, D, G, J, M, P, S, V	Pharos: P43268	Ewing sarcoma Neoplasm Metastasis breast carcinoma prostate cancer atypical teratoid rhabdoid tumor malignant glioma non-small cell lung carcinoma breast cancer glioblastoma osteosarcoma psoriasis lung adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.