4UZ2

Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4uz2c1	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
A	d4uz2a1	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
B	d4uz2b1	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)
D	d4uz2d1	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Thermus thermophilus HB8 ) [TaxId: 300852 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	LysM domain-like	8076155	3001938	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	LysM domain-like	8076155	3001938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8076155	3001938	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	LysM domain-like	8076155	3001938	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	LysM_1	e4uz2C1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)
A	LysM_1	e4uz2A1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)
B	LysM_1	e4uz2B1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)
D	LysM_1	e4uz2D1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01476	LysM domain (LysM)	LysM domain	The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	CELL WALL-BINDING ENDOPEPTIDASE-RELATED PROTEIN	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR052062	Murein DD-endopeptidase/LD-carboxypeptidase	Family
A, B, C, D	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
A, B, C, D	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B, C, D	IPR018392	LysM domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.