4V7H | pdb_00004v7h

Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth AG]	Rota_VP4_MID	e4v7hAG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
K [auth AL]	Rota_VP4_MID	e4v7hAL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
R [auth AT]	Rota_VP4_MID	e4v7hAT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
Z [auth BB]	AAA_16	e4v7hBB1	A: alpha arrays	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_16	ECOD (v295)
DA [auth BF]	Rota_VP4_MID	e4v7hBF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
QA [auth BS]	Rota_VP4_MID	e4v7hBS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
WA [auth BY]	Rota_VP4_MID	e4v7hBY1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
I [auth AJ]	Rota_VP4_MID	e4v7hAJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
H [auth AI]	Cellulase	e4v7hAI1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: Cellulase	ECOD (v295)
G [auth AH]	Rota_VP4_MID	e4v7hAH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
XA [auth BZ]	Rota_VP4_MID	e4v7hBZ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
E [auth AE]	ANF_receptor	e4v7hAE1	A: alpha arrays	X: amino-terminal domain of OmpATb	H: amino-terminal domain of OmpATb	T: amino-terminal domain of OmpATb	F: ANF_receptor	ECOD (v295)
VA [auth BX]	Rota_VP4_MID	e4v7hBX1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
UA [auth BW]	Rota_VP4_MID	e4v7hBW1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
TA [auth BV]	CE2_N	e4v7hBV1	A: alpha arrays	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: CE2_N	ECOD (v295)
SA [auth BU]	Rota_VP4_MID	e4v7hBU1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
RA [auth BT]	Rota_VP4_MID	e4v7hBT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
PA [auth BR]	Rota_VP4_MID	e4v7hBR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
OA [auth BQ]	Rota_VP4_MID	e4v7hBQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
NA [auth BP]	Rota_VP4_MID	e4v7hBP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
D [auth AD]	KAsynt_C_assoc	e4v7hAD1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (v295)
MA [auth BO]	Rota_VP4_MID	e4v7hBO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
LA [auth BN]	Rota_VP4_MID	e4v7hBN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
KA [auth BM]	Rota_VP4_MID	e4v7hBM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
JA [auth BL]	Rota_VP4_MID	e4v7hBL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
IA [auth BK]	Rota_VP4_MID	e4v7hBK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
HA [auth BJ]	Rota_VP4_MID	e4v7hBJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
GA [auth BI]	Rota_VP4_MID	e4v7hBI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
FA [auth BH]	Rota_VP4_MID	e4v7hBH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
EA [auth BG]	Rota_VP4_MID	e4v7hBG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
C [auth AC]	Rota_VP4_MID	e4v7hAC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
CA [auth BE]	Rota_VP4_MID	e4v7hBE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
BA [auth BD]	Rota_VP4_MID	e4v7hBD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
AA [auth BC]	Rota_VP4_MID	e4v7hBC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
Y [auth BA]	Rota_VP4_MID	e4v7hBA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
X [auth B9]	Rota_VP4_MID	e4v7hB91	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
W [auth B8]	KAsynt_C_assoc	e4v7hB81	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (v295)
V [auth B2]	Rota_VP4_MID	e4v7hB21	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
U [auth B1]	Rota_VP4_MID	e4v7hB11	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
T [auth B0]	Rota_VP4_MID	e4v7hB01	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
B [auth AB]	FlaF_Ig-like	e4v7hAB1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295)
Q [auth AR]	Rota_VP4_MID	e4v7hAR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
P [auth AS]	Ribosomal_S17,Ribosomal_S17_N	e4v7hAS1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v295)
O [auth AQ]	Cellulase	e4v7hAQ1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: Cellulase	ECOD (v295)
N [auth AO]	AMP-dom_DIP2-like	e4v7hAO1	A: alpha arrays	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain	T: ssDNA-binding transcriptional regulator domain	F: AMP-dom_DIP2-like	ECOD (v295)
M [auth AN]	Rota_VP4_MID	e4v7hAN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)
L [auth AM]	Cellulase	e4v7hAM1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: Cellulase	ECOD (v295)
J [auth AK]	Rota_VP4_MID	e4v7hAK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (v295)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.