4WPB | pdb_00004wpb

Vascular endothelial growth factor in complex with alpha/beta-VEGF-1


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARibosomal_S7e4wpbA1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (develop294)
BRibosomal_S7e4wpbB1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Ribosomal_S7ECOD (develop294)
CPhyHe4wpbC1 A: alpha bundlesX: ssDNA-binding transcriptional regulator domain-likeH: ssDNA-binding transcriptional regulator domainT: ssDNA-binding transcriptional regulator domainF: PhyHECOD (develop294)
DPhyHe4wpbD1 A: alpha bundlesX: ssDNA-binding transcriptional regulator domain-likeH: ssDNA-binding transcriptional regulator domainT: ssDNA-binding transcriptional regulator domainF: PhyHECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)
B2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00341PDGF/VEGF domain (PDGF)PDGF/VEGF domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Vascular endothelial growth factor A
C, D
alpha/beta-VEGF-1---

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosP15692

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C, D
3FB
C, D
AIB Parent Component: ALA

C, D
B3D Parent Component: ASP

C, D
NH2 RESIDAA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100

PSI-MOD :  L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109
C, D
XCP RESIDAA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100

C, D
XPC RESIDAA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100