4WXS | pdb_00004wxs

Crystal Structure of the E396D SNP Variant of the Myocilin Olfactomedin Domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4wxsa_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Olfactomedin-like	8049986	4006715	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Olfactomedin-like	8052992	3002154	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Flavin_Reduct	e4wxsA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Flavin_Reduct	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Myocilin	cytoskeletal protein binding myosin light chain binding protein binding binding myosin binding signaling receptor binding G protein-coupled receptor binding frizzled binding fibronectin binding protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding cytoskeletal protein binding myosin light chain binding protein binding binding myosin binding signaling receptor binding G protein-coupled receptor binding frizzled binding fibronectin binding protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding cation binding ion binding metal ion binding small molecule binding	muscle hypertrophy multicellular organismal process striated muscle adaptation system process muscle adaptation response to stimulus skeletal muscle adaptation striated muscle hypertrophy muscle system process skeletal muscle hypertrophy developmental process cellular developmental process ossification cell differentiation muscle hypertrophy multicellular organismal process striated muscle adaptation system process muscle adaptation response to stimulus skeletal muscle adaptation striated muscle hypertrophy muscle system process skeletal muscle hypertrophy developmental process cellular developmental process ossification cell differentiation cellular process osteoblast differentiation peripheral nervous system axon ensheathment peripheral nervous system development cell development nervous system development glial cell development myelination multicellular organism development neurogenesis Schwann cell development gliogenesis axon ensheathment ensheathment of neurons glial cell differentiation anatomical structure development myelination in peripheral nervous system Schwann cell differentiation system development regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process negative regulation of biological process regulation of actin filament bundle assembly cellular component biogenesis cellular component organization cellular component assembly actin filament bundle organization actin filament-based process negative regulation of cellular process cellular component organization or biogenesis stress fiber assembly negative regulation of supramolecular fiber organization regulation of biological process regulation of actin filament organization negative regulation of stress fiber assembly actin cytoskeleton organization actomyosin structure organization negative regulation of cellular component organization negative regulation of cytoskeleton organization biological regulation actin filament organization regulation of cellular component biogenesis negative regulation of actin filament bundle assembly regulation of organelle organization regulation of stress fiber assembly organelle organization negative regulation of organelle organization contractile actin filament bundle assembly regulation of actomyosin structure organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of supramolecular fiber organization supramolecular fiber organization cytoskeleton organization cellular response to stimulus cell surface receptor signaling pathway signaling cell communication non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway skeletal system development animal organ development bone development neuron differentiation cell maturation membrane organization clustering of voltage-gated sodium channels developmental maturation neuronal ion channel clustering generation of neurons anatomical structure maturation neuron development neuron maturation regulation of signaling regulation of signal transduction regulation of MAPK cascade intracellular signal transduction regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette MAPK cascade regulation of cell communication regulation of mitochondrial depolarization positive regulation of biological process positive regulation of membrane depolarization positive regulation of mitochondrial depolarization mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization regulation of biological quality regulation of membrane potential positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction positive regulation of response to stimulus positive regulation of cellular process positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling positive regulation of substrate adhesion-dependent cell spreading regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of substrate adhesion-dependent cell spreading regulation of cell adhesion cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion substrate adhesion-dependent cell spreading positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization cell junction assembly regulation of cell-substrate junction organization focal adhesion assembly positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis positive regulation of cell-matrix adhesion regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly ERBB2 signaling pathway ERBB2-ERBB3 signaling pathway cell surface receptor protein tyrosine kinase signaling pathway ERBB signaling pathway ERBB3 signaling pathway enzyme-linked receptor protein signaling pathway positive regulation of JNK cascade JNK cascade positive regulation of MAPK cascade regulation of JNK cascade small GTPase-mediated signal transduction negative regulation of Rho protein signal transduction negative regulation of signaling regulation of small GTPase mediated signal transduction negative regulation of intracellular signal transduction Rho protein signal transduction negative regulation of cell communication negative regulation of response to stimulus negative regulation of small GTPase mediated signal transduction regulation of Rho protein signal transduction negative regulation of signal transduction positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion negative regulation of cell-matrix adhesion negative regulation of cell adhesion negative regulation of cell-substrate adhesion plasma membrane bounded cell projection organization cell projection organization neuron projection development positive regulation of organelle organization positive regulation of actin filament bundle assembly positive regulation of stress fiber assembly positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope mitochondrial envelope cytoplasm organelle membrane axon main axon neuron projection node of Ranvier extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle rough endoplasmic reticulum endoplasmic reticulum endomembrane system cytoplasmic vesicle intracellular vesicle Golgi apparatus organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050605	Olfactomedin-like domain-containing protein	Family
A	IPR003112	Olfactomedin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q99972	glaucoma glaucoma 1, open angle, A Liver Cirrhosis, Experimental open-angle glaucoma glaucoma 3A juvenile open angle glaucoma primary open angle glaucoma hydrophthalmos ovarian cancer psoriasis blindness (disorder) ductal breast carcinoma in situ interstitial cystitis primary congenital glaucoma breast carcinoma glaucoma glaucoma 1, open angle, A Liver Cirrhosis, Experimental open-angle glaucoma glaucoma 3A juvenile open angle glaucoma primary open angle glaucoma hydrophthalmos ovarian cancer psoriasis blindness (disorder) ductal breast carcinoma in situ interstitial cystitis primary congenital glaucoma breast carcinoma lung adenocarcinoma osteosarcoma breast fibroadenoma large cell medulloblastoma ocular hypertension

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.