4YWC | pdb_00004ywc

Crystal structure of Myc3(5-242) fragment in complex with Jaz9(218-239) peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth C]	SCOP2B Superfamily	CCT motif-like	8053393	3002182	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CCT motif-like	8053393	3002182	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GAF domain-like	8053394	3000080	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	GAF domain-like	8053394	3000080	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	bHLH-MYC_N	e4ywcA1	A: a/b three-layered sandwiches	X: Repetitive alpha hairpins	H: Intramembrane protease Rce1-related	T: Intramembrane protease Rce1-related	F: bHLH-MYC_N	ECOD (v294.1)
C [auth B]	PhyH	e4ywcB1	A: a/b three-layered sandwiches	X: ssDNA-binding transcriptional regulator domain-like	H: ssDNA-binding transcriptional regulator domain	T: ssDNA-binding transcriptional regulator domain	F: PhyH	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C], D	PF09425	Jas motif (Jas_motif)	Jas motif	-	Motif
A, C [auth B]	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal (bHLH-MYC_N)	bHLH-MYC and R2R3-MYB transcription factors N-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	Protein TIFY 7	-	regulation of defense response regulation of biological process response to stimulus regulation of response to stimulus defense response regulation of response to stress response to stress biological regulation response to wounding cellular response to stimulus regulation of cellular process response to lipid signaling regulation of jasmonic acid mediated signaling pathway regulation of defense response regulation of biological process response to stimulus regulation of response to stimulus defense response regulation of response to stress response to stress biological regulation response to wounding cellular response to stimulus regulation of cellular process response to lipid signaling regulation of jasmonic acid mediated signaling pathway regulation of signal transduction hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of signaling response to jasmonic acid response to fatty acid response to endogenous stimulus response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid regulation of cell communication cellular process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A, C [auth B]	Transcription factor MYC3	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity transcription factor binding bHLH transcription factor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity transcription factor binding bHLH transcription factor binding DNA-binding transcription factor binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process anthocyanin-containing compound biosynthetic process pigment metabolic process flavonoid metabolic process anthocyanin-containing compound metabolic process flavonoid biosynthetic process pigment biosynthetic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound developmental process multicellular organism development multicellular organismal process stomatal complex development plant epidermis development anatomical structure development post-embryonic development tissue development cellular response to stimulus cellular response to nitrogen compound cellular response to ATP signaling response to organophosphorus response to nitrogen compound response to ATP response to purine-containing compound cellular response to oxygen-containing compound cell communication cellular response to chemical stimulus signal transduction extracellular ATP signaling defense response response to stress	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR040390	TIFY/JAZ family	Family
B [auth C], D	IPR018467	CO/COL/TOC1, conserved site	Conserved Site
B [auth C], D	IPR010399	Tify domain	Domain
A, C [auth B]	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	Domain
A, C [auth B]	IPR054502	Plant bHLH transcription factor, ACT-like domain	Domain
A, C [auth B]	IPR045084	Transcription factor AIB/MYC-like	Family
A, C [auth B]	IPR025610	Transcription factor MYC/MYB N-terminal	Domain
A, C [auth B]	IPR036638	Helix-loop-helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.