4ZCS | pdb_00004zcs

Crystal structure of the C-terminal catalytic domain of Plasmodium falciparum CTP:phosphocholine cytidylyltransferase in complex with CDP-choline

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4zcsf_	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	automated matches	automated matches	(Plasmodium falciparum 3D7 ) [TaxId: 36329 ],	SCOPe (2.08)
E [auth D]	d4zcsd_	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	automated matches	automated matches	(Plasmodium falciparum 3D7 ) [TaxId: 36329 ],	SCOPe (2.08)
D [auth B]	d4zcsb_	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	automated matches	automated matches	(Plasmodium falciparum 3D7 ) [TaxId: 36329 ],	SCOPe (2.08)
C [auth E]	d4zcse_	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	automated matches	automated matches	(Plasmodium falciparum 3D7 ) [TaxId: 36329 ],	SCOPe (2.08)
B [auth C]	d4zcsc_	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	automated matches	automated matches	(Plasmodium falciparum 3D7 ) [TaxId: 36329 ],	SCOPe (2.08)
A	d4zcsa_	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	automated matches	automated matches	(Plasmodium falciparum 3D7 ) [TaxId: 36329 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Ribosomal_L11_N	e4zcsF1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Ribosomal_L11_N	ECOD (develop294)
E [auth D]	Ribosomal_L11_N	e4zcsD1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Ribosomal_L11_N	ECOD (develop294)
D [auth B]	Ribosomal_L11_N	e4zcsB1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Ribosomal_L11_N	ECOD (develop294)
C [auth E]	Ribosomal_L11_N	e4zcsE1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Ribosomal_L11_N	ECOD (develop294)
B [auth C]	Ribosomal_L11_N	e4zcsC1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Ribosomal_L11_N	ECOD (develop294)
A	Ribosomal_L11_N	e4zcsA1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Ribosomal_L11_N	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
E [auth D]	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
D [auth B]	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
C [auth E]	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
B [auth C]	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
A	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth B], E [auth D], A, B [auth C], C [auth E], D [auth B], E [auth D], F	PF01467	Cytidylyltransferase-like (CTP_transf_like)	Cytidylyltransferase-like	This family includes: Cholinephosphate cytidylyltransferase Swiss:P49585; glycerol-3-phosphate cytidylyltransferase Swiss:P27623. It also includes putative adenylyltransferases, and FAD synthases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E], D [auth B], E [auth D], A, B [auth C], C [auth E], D [auth B], E [auth D], F	Choline-phosphate cytidylyltransferase	cytidylyltransferase activity choline-phosphate cytidylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding ion binding binding phosphatidylcholine binding phospholipid binding lipid binding quaternary ammonium group binding small molecule binding cytidylyltransferase activity choline-phosphate cytidylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding ion binding binding phosphatidylcholine binding phospholipid binding lipid binding quaternary ammonium group binding small molecule binding identical protein binding protein binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth B], E [auth D], A, B [auth C], C [auth E], D [auth B], E [auth D], F	IPR041723	CTP:phosphocholine cytidylyltransferase domain	Domain
A, B [auth C], C [auth E], D [auth B], E [auth D], A, B [auth C], C [auth E], D [auth B], E [auth D], F	IPR004821	Cytidyltransferase-like domain	Domain
A, B [auth C], C [auth E], D [auth B], E [auth D], A, B [auth C], C [auth E], D [auth B], E [auth D], F	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily
A, B [auth C], C [auth E], D [auth B], E [auth D], A, B [auth C], C [auth E], D [auth B], E [auth D], F	IPR045049	Choline-phosphate cytidylyltransferase Pcy1-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.