4ZDA | pdb_00004zda

Crystal structure of isocitrate dehydrogenase in complex with isocitrate and Mn from M. smegmatis


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd4zdaf_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Monomeric isocitrate dehydrogenase automated matches (Mycolicibacterium smegmatis ) [TaxId: 1772 ], SCOPe (2.08)
Ed4zdae_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Monomeric isocitrate dehydrogenase automated matches (Mycolicibacterium smegmatis ) [TaxId: 1772 ], SCOPe (2.08)
Dd4zdad_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Monomeric isocitrate dehydrogenase automated matches (Mycolicibacterium smegmatis ) [TaxId: 1772 ], SCOPe (2.08)
Cd4zdac_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Monomeric isocitrate dehydrogenase automated matches (Mycolicibacterium smegmatis ) [TaxId: 1772 ], SCOPe (2.08)
Bd4zdab_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Monomeric isocitrate dehydrogenase automated matches (Mycolicibacterium smegmatis ) [TaxId: 1772 ], SCOPe (2.08)
Ad4zdaa_ Alpha and beta proteins (a/b) Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Monomeric isocitrate dehydrogenase automated matches (Mycolicibacterium smegmatis ) [TaxId: 1772 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8077775 3001375 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8077775 3001375 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8077775 3001375 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8077775 3001375 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8077775 3001375 SCOP2B (2022-06-29)
ASCOP2 FamilyMonomeric isocitrate dehydrogenase 8077774 4003133 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyIsocitrate/Isopropylmalate dehydrogenase-like 8077775 3001375 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FRibos_L4_asso_Ce4zdaF1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ribos_L4_asso_CECOD (v294.1)
ERibos_L4_asso_Ce4zdaE1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ribos_L4_asso_CECOD (v294.1)
DRibos_L4_asso_Ce4zdaD1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ribos_L4_asso_CECOD (v294.1)
CRibos_L4_asso_Ce4zdaC1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ribos_L4_asso_CECOD (v294.1)
BRibos_L4_asso_Ce4zdaB1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ribos_L4_asso_CECOD (v294.1)
ARibos_L4_asso_Ce4zdaA1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ribos_L4_asso_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF03971Monomeric isocitrate dehydrogenase (IDH)Monomeric isocitrate dehydrogenase- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR004436Isocitrate dehydrogenase NADP-dependent, monomericFamily