4F52
Structure of a Glomulin-RBX1-CUL1 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4f52b_ | Small proteins | RING/U-box | RING/U-box | RING finger domain, C3HC4 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d4f52d_ | Small proteins | RING/U-box | RING/U-box | RING finger domain, C3HC4 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003455 | 3000034 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003455 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RING/U-box like | 8040866 | 3000160 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RING/U-box like | 8040866 | 3000160 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Cullin_4th | e4f52C8 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
C | Cullin_2nd | e4f52C7 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
C | Cullin_3rd | e4f52C6 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
A | Cullin_4th | e4f52A2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
A | Cullin_2nd | e4f52A3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
A | Cullin_3rd | e4f52A1 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
B | zf-rbx1 | e4f52B1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
D | zf-rbx1 | e4f52D2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
E | Kinetochor_Ybp2 | e4f52E1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Kinetochor_Ybp2 | ECOD (1.6) |
F | Kinetochor_Ybp2 | e4f52F1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Kinetochor_Ybp2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 1.20.1310.10 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Cullin Repeats | CATH (4.3.0) |
C | 3.30.230.130 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
A | 1.20.1310.10 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Cullin Repeats | CATH (4.3.0) |
A | 3.30.230.130 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
D | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12678 | RING-H2 zinc finger domain (zf-rbx1) | RING-H2 zinc finger domain | There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ... | Domain | |
PF08568 | Uncharacterised protein family, YAP/Alf4/glomulin (Kinetochor_Ybp2) | Uncharacterised protein family, YAP/Alf4/glomulin | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045093 | Cullin | Family | |
IPR019559 | Cullin protein, neddylation domain | Domain | |
IPR016158 | Cullin homology domain | Domain | |
IPR016157 | Cullin, conserved site | Conserved Site | |
IPR001373 | Cullin, N-terminal | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR036317 | Cullin homology domain superfamily | Homologous Superfamily | |
IPR016159 | Cullin repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR051031 | RING-box E3 Ubiquitin Ligase | Family | |
IPR024766 | Zinc finger, RING-H2-type | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR013877 | YAP-binding/ALF4/Glomulin | Family | |
IPR019516 | Glomulin/ALF4 | Family |