5A9K | pdb_00005a9k

Structural basis for DNA strand separation by a hexameric replicative helicase

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Fusion_gly	e5a9kA1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: Immunoglobulin-like domain in paramyxoviruses fusion protein	F: Fusion_gly	ECOD (v294.1)
B	Fusion_gly	e5a9kB1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: Immunoglobulin-like domain in paramyxoviruses fusion protein	F: Fusion_gly	ECOD (v294.1)
D	Fusion_gly	e5a9kD1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: Immunoglobulin-like domain in paramyxoviruses fusion protein	F: Fusion_gly	ECOD (v294.1)
E	Fusion_gly	e5a9kE1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: Immunoglobulin-like domain in paramyxoviruses fusion protein	F: Fusion_gly	ECOD (v294.1)
F	Fusion_gly	e5a9kF1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: Immunoglobulin-like domain in paramyxoviruses fusion protein	F: Fusion_gly	ECOD (v294.1)
C	Fusion_gly	e5a9kC1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains	T: Immunoglobulin-like domain in paramyxoviruses fusion protein	F: Fusion_gly	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	REPLICATION PROTEIN E1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on a nucleic acid helicase activity 3'-5' DNA helicase activity ATP-dependent activity, acting on DNA catalytic activity, acting on DNA macromolecular conformation isomerase activity	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR046935	DNA helicase E1, DNA-binding domain superfamily, papillomavirus	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR046832	DNA helicase E1, DNA-binding domain, papillomavirus	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001177	DNA helicase E1, C-terminal, Papillomavirus	Domain
A, B, C, D, E A, B, C, D, E, F	IPR014000	DNA helicase E1, N-terminal, Papillomavirus	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037102	Zinc finger, large T-antigen D1 domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016393	Replication protein E1, papillomavirus	Family
A, B, C, D, E A, B, C, D, E, F	IPR014015	Helicase, superfamily 3, DNA virus	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.