5AJ4

Structure of the 55S mammalian mitoribosome.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth Ah]SCOP2 FamilyMitochondrial 28S ribosomal protein S31-like 8051223 4007256 SCOP2 (2022-06-29)
AA [auth Ah]SCOP2 SuperfamilyMitochondrial 28S ribosomal protein S31-like 8090912 3002471 SCOP2 (2022-06-29)
ZA [auth BI]SCOP2B SuperfamilyL9 N-domain-like 8070579 3000338 SCOP2B (2022-06-29)
FB [auth BQ]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076055 3000884 SCOP2B (2022-06-29)
IB [auth BT]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8089132 3000334 SCOP2B (2022-06-29)
NB [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082519 3000334 SCOP2B (2022-06-29)
B [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063848 3001397 SCOP2B (2022-06-29)
DB [auth BO]SCOP2B Superfamily50S Ribosomal protein L14-like 8072068 3000433 SCOP2B (2022-06-29)
KB [auth BV]SCOP2B Superfamilyl21p-like 8082451 3002005 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth AC]MRP-S24e5aj4AC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: MRP-S24ECOD (1.6)
E [auth AF]Ribosomal_S6_1e5aj4AF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6_1ECOD (1.6)
G [auth AI]Ribosomal_S9e5aj4AI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
H [auth AJ]Ribosomal_S10_2e5aj4AJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
I [auth AK]Ribosomal_S11e5aj4AK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
K [auth AN]Ribosomal_S14_1e5aj4AN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
M [auth AP]Ribosomal_S16e5aj4AP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
N [auth AQ]Ribosomal_S17_1e5aj4AQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
O [auth AR]Ribosomal_S18e5aj4AR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
P [auth AU]Ribosomal_S21_2e5aj4AU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21_2ECOD (1.6)
Z [auth Ag]DAP3_Ce5aj4Ag1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: DAP3_CECOD (1.6)
Z [auth Ag]DAP3_Ne5aj4Ag2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DAP3_NECOD (1.6)
AA [auth Ah]MRP-S31e5aj4Ah1 A: extended segmentsX: Mitoribosomal protein mS31 (From Topology)H: Mitoribosomal protein mS31 (From Topology)T: Mitoribosomal protein mS31F: MRP-S31ECOD (1.6)
EA [auth Am]KOG4695e5aj4Am1 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: KOG4695ECOD (1.6)
FA [auth An]DUF1713e5aj4An1 A: extended segmentsX: Mitoribosomal protein mS38 (From Topology)H: Mitoribosomal protein mS38 (From Topology)T: Mitoribosomal protein mS38F: DUF1713ECOD (1.6)
HA [auth Ap]Ribosomal_S18e5aj4Ap1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
KA [auth B0]Ribosomal_L27e5aj4B01 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
LA [auth B1]Ribosomal_L28_1e5aj4B11 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1ECOD (1.6)
MA [auth B2]MRP-L47e5aj4B21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
QA [auth B6]Ribosomal_L33e5aj4B61 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
TA [auth B9]Ribosomal_L36e5aj4B91 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
WA [auth BD]Ribosomal_L2e5aj4BD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
WA [auth BD]Ribosomal_L2_Ce5aj4BD2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
ZA [auth BI]Ribosomal_L9_N_1e5aj4BI1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
FB [auth BQ]Ribosomal_L16e5aj4BQ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
GB [auth BR]Ribosomal_L17e5aj4BR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
HB [auth BS]Ribosomal_L18pe5aj4BS1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
IB [auth BT]Ribosomal_L19e5aj4BT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
LB [auth BW]Ribosomal_L22e5aj4BW1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
NB [auth BY]ribosomal_L24_1e5aj4BY1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
PB [auth Bb]PBPe5aj4Bb1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
QB [auth Bc]TGSe5aj4Bc2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
QB [auth Bc]tRNA_SADe5aj4Bc1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
UB [auth Bg]L51_S25_CI-B8e5aj4Bg1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
XB [auth Bj]MRP-L46e5aj4Bj1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
YB [auth Bk]Ribosomal_S10_2e5aj4Bk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
ZB [auth Bl]Img2e5aj4Bl1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
AC [auth Bm]Ribosomal_L50e5aj4Bm1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
BC [auth Bn]MRP-L51e5aj4Bn1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
CC [auth Bo]EUF08791e5aj4Bo1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
FC [auth Bt]MRP-63e5aj4Bt1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
IC [auth Bw]PDCD9e5aj4Bw1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
J [auth AL]Ribosom_S12_S23e5aj4AL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
L [auth AO]Ribosomal_S15_1e5aj4AO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
T [auth Aa]MRP-S22e5aj4Aa1 A: a+b complex topologyX: Mitoribosomal protein mS22 (From Topology)H: Mitoribosomal protein mS22 (From Topology)T: Mitoribosomal protein mS22F: MRP-S22ECOD (1.6)
B [auth AB]Ribosomal_S2_1e5aj4AB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_1ECOD (1.6)
U [auth Ab]MRP-S23e5aj4Ab1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: MRP-S23ECOD (1.6)
V [auth Ac]L51_S25_CI-B8e5aj4Ac1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
W [auth Ad]MRP-S26e5aj4Ad1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: MRP-S26ECOD (1.6)
Y [auth Af]MRP-S35e5aj4Af1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: MRP-S35ECOD (1.6)
BA [auth Ai]MRP-S33e5aj4Ai1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: MRP-S33ECOD (1.6)
CA [auth Aj]MRP-S34e5aj4Aj1 A: beta barrelsX: SH3H: Mitoribosomal protein mS34 (From Topology)T: Mitoribosomal protein mS34F: MRP-S34ECOD (1.6)
DA [auth Ak]UNK_F_TYPEe5aj4Ak1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: UNK_F_TYPEECOD (1.6)
NA [auth B3]Ribosomal_L30e5aj4B31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
D [auth AE]Ribosomal_S5_Ce5aj4AE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
D [auth AE]Ribosomal_S5_1e5aj4AE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_1ECOD (1.6)
D [auth AE]KOG2646e5aj4AE1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: KOG2646ECOD (1.6)
OA [auth B4]Mitoc_L55e5aj4B41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Mitoc_L55ECOD (1.6)
PA [auth B5]KOG4080e5aj4B51 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
RA [auth B7]Ribosomal_L34e5aj4B71 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
SA [auth B8]Ribosomal_L35pe5aj4B81 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
XA [auth BE]Ribosomal_L3e5aj4BE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
YA [auth BF]Ribosomal_L4e5aj4BF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
AB [auth BJ]Ribosomal_L10e5aj4BJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
BB [auth BK]Ribosomal_L11e5aj4BK2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
BB [auth BK]Ribosomal_L11_Ne5aj4BK1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
CB [auth BN]Ribosomal_L13e5aj4BN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
DB [auth BO]Ribosomal_L14e5aj4BO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
EB [auth BP]Ribosomal_L27Ae5aj4BP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
F [auth AG]Ribosomal_S7e5aj4AG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7ECOD (1.6)
JB [auth BU]Ribosomal_L20e5aj4BU1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
KB [auth BV]Ribosomal_L21pe5aj4BV1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
MB [auth BX]Ribosomal_L23_2e5aj4BX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
OB [auth Ba]PDCD9e5aj4Ba1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
RB [auth Bd]MRP-L28e5aj4Bd1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: MRP-L28ECOD (1.6)
SB [auth Be]MRP-L27e5aj4Be1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
TB [auth Bf]MRP-S32e5aj4Bf1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
VB [auth Bh]Ribonucleas_3_3e5aj4Bh2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
VB [auth Bh]dsrme5aj4Bh1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
WB [auth Bi]Tim44e5aj4Bi1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
DC [auth Bp]MRP_L53e5aj4Bp1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)
GC [auth Bu]RF-1_Ne5aj4Bu1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
HC [auth Bv]CR6_interacte5aj4Bv1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
JC [auth Bx]Ribosomal_S18e5aj4Bx1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth AC]PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
I [auth AK]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
M [auth AP]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
N [auth AQ]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
WA [auth BD]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domainDomain
ZA [auth BI]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
FB [auth BQ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
GB [auth BR]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
HB [auth BS]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
IB [auth BT]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
NB [auth BY]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
NB [auth BY]PF00467KOW motif (KOW)KOW motif- Family
L [auth AO]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
B [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
NA [auth B3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
D [auth AE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
D [auth AE]PF21251Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N)Small ribosomal subunit protein uS5m, N-terminalThis entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ...Domain
D [auth AE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
PA [auth B5]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
RA [auth B7]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
AB [auth BJ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AB [auth BJ]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
BB [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
DB [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
DB [auth BO]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
JB [auth BU]PF00472RF-1 domain (RF-1)RF-1 domainThis domain is found in peptide chain release factors such as RF-1 (Swiss:P07011) and RF-2 (Swiss:P07012), and a number of smaller proteins of unknown function such as Swiss:P40711. This domain contains the peptidyl-tRNA hydrolase activity. The domai ...Domain
KB [auth BV]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
MB [auth BX]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]MITORIBOSOMAL 12S Ribosomal RNA---
C [auth AC]MITORIBOSOMAL PROTEIN US3M, MRPS24- -
E [auth AF]MITORIBOSOMAL PROTEIN BS6M, MRPS6---
G [auth AI]MITORIBOSOMAL PROTEIN US9M, MRPS9---
H [auth AJ]MITORIBOSOMAL PROTEIN US10M, MRPS10---
I [auth AK]MITORIBOSOMAL PROTEIN US11M, MRPS11---
K [auth AN]MITORIBOSOMAL PROTEIN US14M, MRPS14---
M [auth AP]MITORIBOSOMAL PROTEIN BS16M, MRPS16---
N [auth AQ]MITORIBOSOMAL PROTEIN US17M, MRPS17
O [auth AR]MITORIBOSOMAL PROTEIN BS18M, MRPS18C---
P [auth AU]MITORIBOSOMAL PROTEIN BS21M, MRPS21---
Q [auth AV],
S [auth AY]
P-SITE AND A-SITE TRNA---
R [auth AX]MRNA---
Z [auth Ag]MITORIBOSOMAL PROTEIN MS29, MRPS29---
AA [auth Ah]MITORIBOSOMAL PROTEIN MS31, MRPS31 -
EA [auth Am]MITORIBOSOMAL PROTEIN MS37, MRPS37-
FA [auth An]MITORIBOSOMAL PROTEIN MS38, MRPS38---
GA [auth Ao]MITORIBOSOMAL PROTEIN MS39, MRPS39
HA [auth Ap]28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL
IA [auth As]UNASSIGNED HELICES---
KA [auth B0]MITORIBOSOMAL PROTEIN BL27M, MRPL27
LA [auth B1]MITORIBOSOMAL PROTEIN BL28M, MRPL28
MA [auth B2]MITORIBOSOMAL PROTEIN UL29M, MRPL47---
QA [auth B6]MITORIBOSOMAL PROTEIN BL33M, MRPL33---
TA [auth B9]MITORIBOSOMAL PROTEIN BL36M, MRPL36---
UA [auth BA]MITORIBOSOMAL 16S Ribosomal RNA---
WA [auth BD]MITORIBOSOMAL PROTEIN UL2M, MRPL2
ZA [auth BI]MITORIBOSOMAL PROTEIN BL9M, MRPL9
FB [auth BQ]MITORIBOSOMAL PROTEIN UL16M, MRPL16
GB [auth BR]MITORIBOSOMAL PROTEIN BL17M, MRPL17
HB [auth BS]MITORIBOSOMAL PROTEIN UL18M, MRPL18
IB [auth BT]MITORIBOSOMAL PROTEIN BL19M, MRPL19
LB [auth BW]MITORIBOSOMAL PROTEIN UL22M, MRPL22---
NB [auth BY]MITORIBOSOMAL PROTEIN UL24M, MRPL24
PB [auth Bb]MITORIBOSOMAL PROTEIN ML38, MRPL38- -
QB [auth Bc]MITORIBOSOMAL PROTEIN ML39, MRPL39---
UB [auth Bg]MITORIBOSOMAL PROTEIN ML43, MRPL43
XB [auth Bj]MITORIBOSOMAL PROTEIN ML46, MRPL46 -
YB [auth Bk]MITORIBOSOMAL PROTEIN ML48, MRPL48---
ZB [auth Bl]MITORIBOSOMAL PROTEIN ML49, MRPL49---
AC [auth Bm]MITORIBOSOMAL PROTEIN ML50, MRPL50- -
BC [auth Bn]MITORIBOSOMAL PROTEIN ML51, MRPL51---
CC [auth Bo]MITORIBOSOMAL PROTEIN ML52, MRPL52
EC [auth Bq]MITORIBOSOMAL PROTEIN ML54, MRPL54---
FC [auth Bt]MITORIBOSOMAL PROTEIN ML63, MRPL57---
IC [auth Bw]MITORIBOSOMAL PROTEIN ML65, MRPS30---
KC [auth Bz]UNASSIGNED SECONDARY STRUCTURE ELEMENTS---
J [auth AL]MITORIBOSOMAL PROTEIN US12M, MRPS12---
L [auth AO]MITORIBOSOMAL PROTEIN US15M, MRPS15---
T [auth Aa]MITORIBOSOMAL PROTEIN MS22, MRPS22---
B [auth AB]MITORIBOSOMAL PROTEIN US2M, MRPS2
U [auth Ab]MITORIBOSOMAL PROTEIN MS23, MRPS23---
V [auth Ac]MITORIBOSOMAL PROTEIN MS25, MRPS25---
W [auth Ad]MITORIBOSOMAL PROTEIN MS26, MRPS26- -
X [auth Ae]MITORIBOSOMAL PROTEIN MS27, MRPS27---
Y [auth Af]MITORIBOSOMAL PROTEIN MS28, MRPS28---
BA [auth Ai]MITORIBOSOMAL PROTEIN MS33, MRPS33- -
CA [auth Aj]MITORIBOSOMAL PROTEIN MS34, MRPS34---
DA [auth Ak]MITORIBOSOMAL PROTEIN MS35, MRPS35
JA [auth Az]UNASSIGNED HELICES---
NA [auth B3]MITORIBOSOMAL PROTEIN UL30M, MRPL30
D [auth AE]MITORIBOSOMAL PROTEIN US5M, MRPS5
OA [auth B4]MITORIBOSOMAL PROTEIN BL31M, MRPL55---
PA [auth B5]MITORIBOSOMAL PROTEIN BL32M, MRPL32
RA [auth B7]MITORIBOSOMAL PROTEIN BL34M, MRPL34
SA [auth B8]MITORIBOSOMAL PROTEIN BL35M, MRPL35- -
VA [auth BB]MITORIBOSOMAL CP TRNA---
XA [auth BE]MITORIBOSOMAL PROTEIN UL3M, MRPL3---
YA [auth BF]MITORIBOSOMAL PROTEIN UL4M, MRPL4---
AB [auth BJ]MITORIBOSOMAL PROTEIN UL10M, MRPL10- -
BB [auth BK]MITORIBOSOMAL PROTEIN UL11M, MRPL11
CB [auth BN]MITORIBOSOMAL PROTEIN UL13M, MRPL13---
DB [auth BO]MITORIBOSOMAL PROTEIN UL14M, MRPL14
EB [auth BP]MITORIBOSOMAL PROTEIN UL15M, MRPL15---
F [auth AG]MITORIBOSOMAL PROTEIN US7M, MRPS7---
JB [auth BU]MITORIBOSOMAL PROTEIN BL20M, MRPL20---
KB [auth BV]MITORIBOSOMAL PROTEIN BL21M, MRPL21
MB [auth BX]MITORIBOSOMAL PROTEIN UL23M, MRPL23---
OB [auth Ba]MITORIBOSOMAL PROTEIN ML37, MRPL37---
RB [auth Bd]MITORIBOSOMAL PROTEIN ML40, MRPL40---
SB [auth Be]MITORIBOSOMAL PROTEIN ML41, MRPL41---
TB [auth Bf]MITORIBOSOMAL PROTEIN ML42, MRPL42---
VB [auth Bh]MITORIBOSOMAL PROTEIN ML44, MRPL44
WB [auth Bi]MITORIBOSOMAL PROTEIN ML45, MRPL45---
DC [auth Bp]MITORIBOSOMAL PROTEIN ML53, MRPL53- - -
GC [auth Bu]MITORIBOSOMAL PROTEIN ML62, MRPL58
HC [auth Bv]MITORIBOSOMAL PROTEIN ML64, MRPL59---
JC [auth Bx]MITORIBOSOMAL PROTEIN ML66, MRPS18A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth AC]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
N [auth AQ]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
N [auth AQ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth AQ]IPR000266Small ribosomal subunit protein uS17Family
AA [auth Ah]IPR026299Mitochondrial 28S ribosomal protein S31Family
EA [auth Am]IPR010625CHCHDomain
EA [auth Am]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
EA [auth Am]IPR033620Small ribosomal subunit protein mS37, metazoanFamily
GA [auth Ao]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
GA [auth Ao]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
GA [auth Ao]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
GA [auth Ao]IPR002885Pentatricopeptide repeatRepeat
HA [auth Ap]IPR040054Small ribosomal subunit protein mS40Family
HA [auth Ap]IPR001648Small ribosomal subunit protein bS18Family
HA [auth Ap]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
KA [auth B0]IPR001684Large ribosomal subunit protein bL27Family
LA [auth B1]IPR005484Large ribosomal subunit protein uL18Family
LA [auth B1]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
WA [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WA [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
WA [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
WA [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WA [auth BD]IPR002171Large ribosomal subunit protein uL2Family
ZA [auth BI]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
ZA [auth BI]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
ZA [auth BI]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
ZA [auth BI]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
ZA [auth BI]IPR000244Large ribosomal subunit protein bL9Family
FB [auth BQ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
FB [auth BQ]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
FB [auth BQ]IPR016180Large ribosomal subunit protein uL16 domainDomain
FB [auth BQ]IPR047873Large ribosomal subunit protein uL16Family
GB [auth BR]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
GB [auth BR]IPR000456Large ribosomal subunit protein bL17Family
HB [auth BS]IPR005484Large ribosomal subunit protein uL18Family
HB [auth BS]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IB [auth BT]IPR001857Large ribosomal subunit protein bL19Family
IB [auth BT]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IB [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NB [auth BY]IPR003256Large ribosomal subunit protein uL24Family
NB [auth BY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
NB [auth BY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NB [auth BY]IPR005824KOWDomain
NB [auth BY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NB [auth BY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
PB [auth Bb]IPR036610PEBP-like superfamilyHomologous Superfamily
PB [auth Bb]IPR008914Phosphatidylethanolamine-binding proteinFamily
PB [auth Bb]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
UB [auth Bg]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
UB [auth Bg]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
UB [auth Bg]IPR039927Large ribosomal subunit protein mL43Family
XB [auth Bj]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
XB [auth Bj]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
XB [auth Bj]IPR040008Large ribosomal subunit protein mL46Family
XB [auth Bj]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
AC [auth Bm]IPR018305Large ribosomal subunit protein mL50Family
CC [auth Bo]IPR034596Large ribosomal subunit protein mL52Family
B [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth AB]IPR001865Small ribosomal subunit protein uS2Family
W [auth Ad]IPR026140Small ribosomal subunit protein mS26Family
BA [auth Ai]IPR013219Small ribosomal subunit protein mS33Family
DA [auth Ak]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
DA [auth Ak]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
NA [auth B3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
NA [auth B3]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
NA [auth B3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
D [auth AE]IPR000851Small ribosomal subunit protein uS5Family
D [auth AE]IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
D [auth AE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth AE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth AE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth AE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth AE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PA [auth B5]IPR002677Large ribosomal subunit protein bL32Family
PA [auth B5]IPR051991Mitochondrial ribosomal protein bL32Family
PA [auth B5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth B7]IPR000271Large ribosomal subunit protein bL34Family
SA [auth B8]IPR019338Large ribosomal subunit protein bL35mFamily
AB [auth BJ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
AB [auth BJ]IPR001790Large ribosomal subunit protein uL10Family
AB [auth BJ]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
BB [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
BB [auth BK]IPR000911Ribosomal protein uL11Family
BB [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
BB [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
DB [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DB [auth BO]IPR000218Large ribosomal subunit protein uL14Family
KB [auth BV]IPR028909Large ribosomal subunit protein bL21-likeFamily
KB [auth BV]IPR001787Large ribosomal subunit protein bL21Family
KB [auth BV]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
VB [auth Bh]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
VB [auth Bh]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
VB [auth Bh]IPR014720Double-stranded RNA-binding domainDomain
VB [auth Bh]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
DC [auth Bp]IPR026700Coiled-coil domain-containing protein 142Family
GC [auth Bu]IPR000352Peptide chain release factor class IDomain
GC [auth Bu]IPR052104Mitochondrial Release Factor mL62Family
JC [auth Bx]IPR001648Small ribosomal subunit protein bS18Family
JC [auth Bx]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily