5B5M | pdb_00005b5m

Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth AB]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
XA [auth z]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TB [auth c]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TA [auth s]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RB [auth k]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RA [auth q]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PB [auth i]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PA [auth n]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NB [auth g]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
LB [auth e]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
JB [auth AL]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
JA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
HB [auth AJ]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
HA [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
FB [auth AH]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
DB [auth AF]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
BB [auth AD]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NA [auth t]SCOP2B SuperfamilyPRC-barrel domain 8097584 3000637 SCOP2B (2022-06-29)
NA [auth t]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100954 3000750 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyPRC-barrel domain 8097584 3000637 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100954 3000750 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8090735 3002452 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8073228 3002452 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8090735 3002452 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8073228 3002452 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth AB]AHAS-like_ACTe5b5mAB1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
ZAHAS-like_ACTe5b5mZ1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
XA [auth z]AHAS-like_ACTe5b5mz1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
XAHAS-like_ACTe5b5mX1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
VA [auth v]AHAS-like_ACTe5b5mv1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
VAHAS-like_ACTe5b5mV1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
TB [auth c]AHAS-like_ACTe5b5mc1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
TA [auth s]AHAS-like_ACTe5b5ms1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
TAHAS-like_ACTe5b5mT1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
RB [auth k]AHAS-like_ACTe5b5mk1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
RA [auth q]AHAS-like_ACTe5b5mq1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
RAHAS-like_ACTe5b5mR1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
PB [auth i]AHAS-like_ACTe5b5mi1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
PA [auth n]AHAS-like_ACTe5b5mn1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
PAHAS-like_ACTe5b5mP1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
NB [auth g]AHAS-like_ACTe5b5mg1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
NAHAS-like_ACTe5b5mN1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
LB [auth e]AHAS-like_ACTe5b5me1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
L [auth J]AHAS-like_ACTe5b5mJ1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
JB [auth AL]AHAS-like_ACTe5b5mAL1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
JA [auth 0]AHAS-like_ACTe5b5m01 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
J [auth G]AHAS-like_ACTe5b5mG1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
HB [auth AJ]AHAS-like_ACTe5b5mAJ1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
HA [auth 8]AHAS-like_ACTe5b5m81 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
H [auth E]AHAS-like_ACTe5b5mE1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
FB [auth AH]AHAS-like_ACTe5b5mAH1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
FA [auth 6]AHAS-like_ACTe5b5m61 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
F [auth B]AHAS-like_ACTe5b5mB1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
DB [auth AF]AHAS-like_ACTe5b5mAF1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
DA [auth 4]AHAS-like_ACTe5b5m41 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
BB [auth AD]AHAS-like_ACTe5b5mAD1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
BA [auth 2]AHAS-like_ACTe5b5m21 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
YA [auth AA]AHAS-like_ACTe5b5mAA1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
YAHAS-like_ACTe5b5mY1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
WA [auth w]AHAS-like_ACTe5b5mw1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
WAHAS-like_ACTe5b5mW1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
UA [auth u]AHAS-like_ACTe5b5mu1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
UAHAS-like_ACTe5b5mU1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
SB [auth l]AHAS-like_ACTe5b5ml1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
SA [auth r]AHAS-like_ACTe5b5mr1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
SAHAS-like_ACTe5b5mS1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
QB [auth j]AHAS-like_ACTe5b5mj1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
QA [auth p]AHAS-like_ACTe5b5mp1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
QAHAS-like_ACTe5b5mQ1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
OB [auth h]AHAS-like_ACTe5b5mh1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
OA [auth m]AHAS-like_ACTe5b5mm1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
OAHAS-like_ACTe5b5mO1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
MB [auth f]AHAS-like_ACTe5b5mf1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
M [auth K]AHAS-like_ACTe5b5mK1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
KB [auth d]AHAS-like_ACTe5b5md1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
K [auth I]AHAS-like_ACTe5b5mI1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
IB [auth AK]AHAS-like_ACTe5b5mAK1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
IA [auth 9]AHAS-like_ACTe5b5m91 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
I [auth F]AHAS-like_ACTe5b5mF1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
GB [auth AI]AHAS-like_ACTe5b5mAI1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
GA [auth 7]AHAS-like_ACTe5b5m71 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
G [auth D]AHAS-like_ACTe5b5mD1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
EB [auth AG]AHAS-like_ACTe5b5mAG1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
EA [auth 5]AHAS-like_ACTe5b5m51 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
E [auth A]AHAS-like_ACTe5b5mA1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
CB [auth AE]AHAS-like_ACTe5b5mAE1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
CA [auth 3]AHAS-like_ACTe5b5m31 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
AB [auth AC]AHAS-like_ACTe5b5mAC1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
AA [auth 1]AHAS-like_ACTe5b5m11 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
NA [auth t]AHAS-like_ACTe5b5mt1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
D [auth H]AHAS-like_ACTe5b5mH1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
MA [auth y]AHAS-like_ACTe5b5my1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
C [auth M]AHAS-like_ACTe5b5mM1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
LA [auth x]AHAS-like_ACTe5b5mx1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
B [auth L]AHAS-like_ACTe5b5mL1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
KA [auth o]AHAS-like_ACTe5b5mo1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)
A [auth C]AHAS-like_ACTe5b5mC1 A: alpha bundlesX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: AHAS-like_ACTECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
LH1 beta polypeptide
LH1 alpha polypeptide
D [auth H],
NA [auth t]
Photosynthetic reaction center H subunit-
C [auth M],
MA [auth y]
Photosynthetic reaction center M subunit
B [auth L],
LA [auth x]
Photosynthetic reaction center L subunit
A [auth C],
KA [auth o]
Photosynthetic reaction center cytochrome c subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
D [auth H],
NA [auth t]
IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
D [auth H],
NA [auth t]
IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
D [auth H],
NA [auth t]
IPR005652Photosynthetic reaction centre, H subunitFamily
D [auth H],
NA [auth t]
IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
D [auth H],
NA [auth t]
IPR011033PRC-barrel-like superfamilyHomologous Superfamily
D [auth H],
NA [auth t]
IPR027275PRC-barrel domainDomain
C [auth M],
MA [auth y]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth M],
MA [auth y]
IPR005781Photosynthetic reaction centre, M subunitFamily
C [auth M],
MA [auth y]
IPR000484Photosynthetic reaction centre, L/MFamily
C [auth M],
MA [auth y]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L],
LA [auth x]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth L],
LA [auth x]
IPR000484Photosynthetic reaction centre, L/MFamily
B [auth L],
LA [auth x]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L],
LA [auth x]
IPR005871Photosynthetic reaction centre, L subunitFamily
A [auth C],
KA [auth o]
IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
A [auth C],
KA [auth o]
IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
A [auth C],
KA [auth o]
IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily