5BRP | pdb_00005brp

Crystal structure of Bacillus licheniformis trehalose-6-phosphate hydrolase (TreA), mutant R201Q, in complex with PNG


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5brpa2 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Ad5brpa1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Cd5brpc2 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Cd5brpc1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Dd5brpd2 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Dd5brpd1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Bd5brpb2 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)
Bd5brpb1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases automated matches automated matches (Bacillus licheniformis DSM 13 = ATCC 14580 ) [TaxId: 279010 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamily(Trans)glycosidases 8099772 3000313 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8101028 3001528 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8101028 3001528 SCOP2B (2022-06-29)
CSCOP2B Superfamily(Trans)glycosidases 8099772 3000313 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8101028 3001528 SCOP2B (2022-06-29)
DSCOP2B Superfamily(Trans)glycosidases 8099772 3000313 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8099772 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8101028 3001528 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMalt_amylase_C_2e5brpA2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Malt_amylase_C_2ECOD (1.6)
AAlpha-amylasee5brpA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Alpha-amylaseECOD (1.6)
CMalt_amylase_C_2e5brpC2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Malt_amylase_C_2ECOD (1.6)
CAlpha-amylasee5brpC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Alpha-amylaseECOD (1.6)
DMalt_amylase_C_2e5brpD2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Malt_amylase_C_2ECOD (1.6)
DAlpha-amylasee5brpD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Alpha-amylaseECOD (1.6)
BMalt_amylase_C_2e5brpB2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Malt_amylase_C_2ECOD (1.6)
BAlpha-amylasee5brpB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Alpha-amylaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00128Alpha amylase, catalytic domain (Alpha-amylase)Alpha amylase, catalytic domainAlpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ...Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Domain
A, B, C, D
PF23915Alpha-amylase SusG C-terminal domain (SusG_C)Alpha-amylase SusG C-terminal domainThis entry represents the C-terminal domain found in the starch utilization system protein G (SusG) from bacteria. SusG forms part of the SusDEFG lipoprotein complex tethered to the outer surface of the cell and is involved in starch hydrolysis and s ...This entry represents the C-terminal domain found in the starch utilization system protein G (SusG) from bacteria. SusG forms part of the SusDEFG lipoprotein complex tethered to the outer surface of the cell and is involved in starch hydrolysis and subsequent utilization of the resulting sugars as an energy source [1]. SusG has been shown to have enzymatic starch-hydrolysing activity [2]. This entry also represents the C-terminal domain of other oligo-1,6-glucosidases, such as the trehalose-6-phosphate hydrolase TreA, glucan 1,6-alpha-glucosidase dexB and Oligo-1,6-glucosidase 1 malL from bacteria. The function of this domain is unknown.
Domain