5CJO
Crystal Structure Analysis of Elbow-Engineered-Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Insulin
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_M16_M_C | e5cjoA1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_C | ECOD (1.6) |
A | Peptidase_M16_M_N | e5cjoA4 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_N | ECOD (1.6) |
A | Peptidase_M16_C_2 | e5cjoA2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_C_2 | ECOD (1.6) |
A | Peptidase_M16 | e5cjoA3 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16 | ECOD (1.6) |
C [auth L] | C1-set_4 | e5cjoL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e5cjoL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth H] | V-set_8 | e5cjoH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e5cjoH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
C [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth L] | Elbow engineered Fab | L-KAPPA | Mus musculus (house mouse) | IGKV10-94*01, IGKV10-94*03, IGKV10-94*04, IGKV10-94*06, IGKV10-94*05, IGKV10-94*08, IGKJ1*01, IGKJ2*01, IGKJ2*03, IGKJ4*01, IGKJ4*02, IGKC*03 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202450-0) |
B [auth H] | Elbow engineered Fab | VH-CH1 | Mus musculus (house mouse) | IGHV5-6-3*01, IGHV5-17*01, IGHV5-12-1*01, IGHV5-9-3*01, IGHJ3*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202450-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth L] | Light Chain | IGKV1 | Kappa | insulin | SAbDab (2024-12-20) |
B [auth H] | Heavy Chain | IGHV3 | - | insulin | SAbDab (2024-12-20) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
PF16187 | Middle or third domain of peptidase_M16 (Peptidase_M16_M) | Middle or third domain of peptidase_M16 | - | Family | |
PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011249 | Metalloenzyme, LuxS/M16 peptidase-like | Homologous Superfamily | |
IPR050626 | Peptidase M16 | Family | |
IPR032632 | Peptidase M16, middle/third domain | Domain | |
IPR001431 | Peptidase M16, zinc-binding site | Binding Site | |
IPR007863 | Peptidase M16, C-terminal | Domain | |
IPR054734 | Coenzyme PQQ synthesis protein F-like, C-terminal lobe, domain 4 | Domain | |
IPR011765 | Peptidase M16, N-terminal | Domain | |
D [auth a] | IPR004825 | Insulin | Family |
D [auth a] | IPR022353 | Insulin, conserved site | Conserved Site |
D [auth a] | IPR036438 | Insulin-like superfamily | Homologous Superfamily |
D [auth a] | IPR022352 | Insulin family | Family |
D [auth a] | IPR016179 | Insulin-like | Domain |