5CKN
The CUB1-EGF-CUB2 domains of rat MBL-associated serine protease-2 (MASP-2) bound to Ca2+
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5ckna1 | All beta proteins | CUB-like | Spermadhesin, CUB domain | Spermadhesin, CUB domain | automated matches | norway Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
A | d5ckna2 | Small proteins | Knottins (small inhibitors, toxins, lectins) | EGF/Laminin | automated matches | automated matches | norway Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B [auth D] | d5cknd1 | All beta proteins | CUB-like | Spermadhesin, CUB domain | Spermadhesin, CUB domain | automated matches | norway Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B [auth D] | d5cknd2 | Small proteins | Knottins (small inhibitors, toxins, lectins) | EGF/Laminin | automated matches | automated matches | norway Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Spermadhesin, CUB domain | 8033584 | 3001412 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Spermadhesin, CUB domain | 8033583 | 3001412 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EGF/Laminin-like | 8033585 | 3000412 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | EGF/Laminin-like | 8033585 | 3000412 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Spermadhesin, CUB domain | 8033584 | 3001412 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Spermadhesin, CUB domain | 8033583 | 3001412 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CUB | e5cknA1 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: CUB | ECOD (1.6) |
A | EGF_CA | e5cknA3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF_CA | ECOD (1.6) |
B [auth D] | CUB | e5cknD1 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: CUB | ECOD (1.6) |
B [auth D] | EGF_CA | e5cknD3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF_CA | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.290 | Mainly Beta | Sandwich | Jelly Rolls | Spermadhesin, CUB domain | CATH (4.3.0) |
A | 2.10.25.10 | Mainly Beta | Ribbon | Laminin | Laminin | CATH (4.3.0) |
B [auth D] | 2.60.120.290 | Mainly Beta | Sandwich | Jelly Rolls | Spermadhesin, CUB domain | CATH (4.3.0) |
B [auth D] | 2.10.25.10 | Mainly Beta | Ribbon | Laminin | Laminin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth D] | PF07645 | Calcium-binding EGF domain (EGF_CA) | Calcium-binding EGF domain | - | Domain |
A, B [auth D] | PF00431 | CUB domain (CUB) | CUB domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth D] | IPR049883 | NOTCH1 EGF-like calcium-binding domain | Domain |
A, B [auth D] | IPR009003 | Peptidase S1, PA clan | Homologous Superfamily |
A, B [auth D] | IPR018097 | EGF-like calcium-binding, conserved site | Conserved Site |
A, B [auth D] | IPR001314 | Peptidase S1A, chymotrypsin family | Family |
A, B [auth D] | IPR033116 | Serine proteases, trypsin family, serine active site | Active Site |
A, B [auth D] | IPR035914 | Spermadhesin, CUB domain superfamily | Homologous Superfamily |
A, B [auth D] | IPR001254 | Serine proteases, trypsin domain | Domain |
A, B [auth D] | IPR001881 | EGF-like calcium-binding domain | Domain |
A, B [auth D] | IPR000436 | Sushi/SCR/CCP domain | Domain |
A, B [auth D] | IPR000859 | CUB domain | Domain |
A, B [auth D] | IPR000742 | EGF-like domain | Domain |
A, B [auth D] | IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily |
A, B [auth D] | IPR024175 | Peptidase S1A, complement C1r/C1S/mannan-binding | Family |
A, B [auth D] | IPR035976 | Sushi/SCR/CCP superfamily | Homologous Superfamily |