5CKT

Crystal Structure of KorA, a plasmid-encoded, global transcription regulator

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Sigma factor domain-like	8091436	3000953	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sigma factor domain-like	8091436	3000953	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sigma factor domain-like	8091436	3000953	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sigma factor domain-like	8091436	3000953	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KORA	e5cktA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: KORA	ECOD (1.6)
B	KORA	e5cktB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: KORA	ECOD (1.6)
C	KORA	e5cktC1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: KORA	ECOD (1.6)
D	KORA	e5cktD1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: KORA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.2690	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)
C	1.10.10.2690	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF16509	TrfB plasmid transcriptional repressor (KORA)	TrfB plasmid transcriptional repressor	KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts t ...	KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts the DNA via the helix-turn-helix region at the N-terminus [1].	Domain
D	PF16509	TrfB plasmid transcriptional repressor (KORA)	TrfB plasmid transcriptional repressor	KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts t ...	KORA is a family of Gram-negative bacterial proteins that act as global repressors of genes involved in plasmid replication, conjugative transfer and stable inheritance in the IncP group of plasmids. KORA operates as a symmetric dimer, and contacts the DNA via the helix-turn-helix region at the N-terminus [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	TrfB transcriptional repressor protein	DNA binding binding nucleic acid binding	-	-
D	TrfB transcriptional repressor protein	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR053721	Fimbrial Adhesin Regulatory Protein	Homologous Superfamily
A, B, C	IPR032428	TrfB transcriptional repressor protein	Domain
D	IPR053721	Fimbrial Adhesin Regulatory Protein	Homologous Superfamily
D	IPR032428	TrfB transcriptional repressor protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.