Annotations: 5D0Q

BamACDE complex, outer membrane beta-barrel assembly machinery (BAM) complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth I]	SCOP2B Superfamily	BLIP repeat-like	8092082	3000321	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	BLIP repeat-like	8092082	3000321	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TPR-like	8058058	3001345	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	TPR-like	8058058	3001345	SCOP2B (2022-06-29)
B [auth C]	SCOP2 Family	BamC-like	8048764	4006210	SCOP2 (2022-06-29)
B [auth C]	SCOP2 Superfamily	Flpp3/BamC-like	8104065	3002816	SCOP2 (2022-06-29)
B [auth C]	SCOP2 Superfamily	Flpp3/BamC-like	8104066	3002816	SCOP2 (2022-06-29)
E [auth F]	SCOP2B Superfamily	POTRA domain-like	8052275	3002100	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	POTRA domain-like	8052274	3002100	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	POTRA domain-like	8052273	3002100	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Porins	8052233	3000224	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	POTRA domain-like	8052272	3002100	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	POTRA domain-like	8052271	3002100	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	POTRA domain-like	8052271	3002100	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Porins	8052233	3000224	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	POTRA domain-like	8052273	3002100	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	POTRA domain-like	8052274	3002100	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	POTRA domain-like	8052272	3002100	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	POTRA domain-like	8052275	3002100	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth I]		e5d0qI1	A: beta barrels	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F:	ECOD (v294.2)
D [auth E]		e5d0qE1	A: beta barrels	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F:	ECOD (v294.2)
H		e5d0qH1	A: beta barrels	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F:	ECOD (v294.2)
C [auth D]		e5d0qD1	A: beta barrels	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F:	ECOD (v294.2)
F [auth G]	MIF4G	e5d0qG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
B [auth C]	PF29358	e5d0qC1	A: beta barrels	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: PF29358	ECOD (v294.2)
B [auth C]	Lipoprotein_18	e5d0qC2	A: beta barrels	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Lipoprotein_18	ECOD (v294.2)
E [auth F]		e5d0qF1	A: beta barrels	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F:	ECOD (v294.2)
A		e5d0qA1	A: beta barrels	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F:	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth I]	3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein	Chain:B, domain 1	CATH (4.3.0)
D [auth E]	3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein	Chain:B, domain 1	CATH (4.3.0)
H	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
C [auth D]	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
E [auth F]	2.40.160.50	Mainly Beta	Beta Barrel	Porin	membrane protein fhac: a member of the omp85/tpsb transporter family	CATH (utative)
A	2.40.160.50	Mainly Beta	Beta Barrel	Porin	membrane protein fhac: a member of the omp85/tpsb transporter family	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth E], G [auth I]	PF04355	Outer membrane protein assembly factor BamE domain (BamE)	Outer membrane protein assembly factor BamE domain	This domain is found in bacterial outer membrane lipoproteins probably involved in maintaining the structural integrity of the cell envelope [1], including Outer membrane protein assembly factor BamE from Vibrio cholerae (also known as SmpA). The lip ...	This domain is found in bacterial outer membrane lipoproteins probably involved in maintaining the structural integrity of the cell envelope [1], including Outer membrane protein assembly factor BamE from Vibrio cholerae (also known as SmpA). The lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (Pfam:PF00691).	Domain
C [auth D], H	PF13525	Outer membrane lipoprotein (YfiO)	Outer membrane lipoprotein	-	Repeat
B [auth C], F [auth G]	PF06804	Outer membrane protein assembly factor BamC-like C-terminal domain (BamC_C)	Outer membrane protein assembly factor BamC-like C-terminal domain	This entry represents the C-terminal domain of BamC and related sequences. BamC is part of the outer membrane protein assembly Bam complex (composed of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE), which is involv ...	This entry represents the C-terminal domain of BamC and related sequences. BamC is part of the outer membrane protein assembly Bam complex (composed of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE), which is involved in assembly and insertion of beta-barrel proteins into the outer membrane [1-5]. E. coli BamC is a nonessential member of the Bam complex that stabilises the interaction between the essential proteins BamA and BamD [6]. This entry also includes NMB0928 from Neisseria meningitidis whose function is unknown.	Domain
A, E [auth F]	PF07244	Surface antigen variable number repeat (POTRA)	Surface antigen variable number repeat	This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members ...	This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.	Domain
A, E [auth F]	PF01103	Omp85 superfamily domain (Omp85)	Omp85 superfamily domain	The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ...	The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth E], G [auth I]	Outer membrane protein assembly factor BamE	protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane response to stimulus response to chemical response to antibiotic	cellular anatomical structure membrane protein-containing complex extracellular region periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex cell outer membrane external encapsulating structure cell envelope extracellular protein-containing complex outer membrane
C [auth D], H	Outer membrane protein assembly factor BamD	-	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cellular anatomical structure membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane protein-containing complex periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex extracellular protein-containing complex
B [auth C], F [auth G]	Outer membrane protein assembly factor BamC	identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cell surface cellular anatomical structure membrane protein-containing complex extracellular region periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex cell outer membrane external encapsulating structure cell envelope extracellular protein-containing complex outer membrane
A, E [auth F]	Outer membrane protein assembly factor BamA	protein binding binding protein-folding chaperone binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane cell adhesion	cellular anatomical structure membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane protein-containing complex periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex extracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth E], G [auth I]	IPR037873	BamE-like	Homologous Superfamily
D [auth E], G [auth I]	IPR007450	Outer membrane protein assembly factor BamE domain	Domain
D [auth E], G [auth I]	IPR026592	Outer membrane protein assembly factor BamE	Family
C [auth D], H	IPR039565	Outer membrane lipoprotein BamD-like	Domain
C [auth D], H	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
C [auth D], H	IPR017689	Outer membrane protein assembly factor BamD	Family
B [auth C], F [auth G]	IPR010653	Outer membrane protein assembly factor BamC-like	Domain
B [auth C], F [auth G]	IPR042268	Outer membrane protein assembly factor BamC, C-terminal	Homologous Superfamily
B [auth C], F [auth G]	IPR014524	Outer membrane protein assembly factor BamC	Family
A, E [auth F]	IPR039910	Surface antigen D15-like	Family
A, E [auth F]	IPR000184	Outer membrane protein assembly factor BamA-like	Domain
A, E [auth F]	IPR034746	POTRA domain	Domain
A, E [auth F]	IPR010827	POTRA domain, BamA/TamA-like	Domain
A, E [auth F]	IPR023707	Outer membrane protein assembly factor BamA	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth C], C [auth D], D [auth E], E [auth F] A, B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth I], H	OPM	Transmembrane	Beta-barrel transmembrane	Omp85-TpsB transporters (n=16,S=20,22)	OMP insertion (Bam complex) porin (n=16,S=22)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B [auth C], C [auth D], D [auth E], E [auth F] A, B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth I], H	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B [auth C], C [auth D], D [auth E], E [auth F] A, B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth I], H	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B [auth C], C [auth D], D [auth E], E [auth F] A, B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth I], H	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Omp85-TpsB Outer Membrane Transporter Superfamily	BamABCDE complex of the Bam β-barrel assembly machine

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.