Structure of human ATG5 E122D-ATG16L1 complex at 3.0 Angstroms
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | e5d7gD1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| H | e5d7gH1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| F | e5d7gF1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| B | e5d7gB1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| E | e5d7gE1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| G | e5d7gG1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| C | e5d7gC1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) | |
| A | e5d7gA1 | A: dsRBD-like | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | T: IBR_2 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF20637 | Autophagy protein ATG5, alpha-helical bundle region (ATG5_HBR) | Autophagy protein ATG5, alpha-helical bundle region | Autophagy protein ATG5 is involved in autophagic vesicle formation. It is conjugated with ATG12, acting as an E3-like ubiquitin enzyme required for lipidation of ATG8 family proteins and their association to the vesicle membranes. ATG5 comprises two ... | Domain | |
| PF20638 | Autophagy protein ATG5, UblA domain (ATG5_UblA) | Autophagy protein ATG5, UblA domain | This is the N-terminal ubiquitin-like domain, termed UblA, from autophagy protein ATG5 [1,2]. ATG5 comprises two ubiquitin-like domains (UblA and UblB) that flank a helix-rich domain (HBR). Both UblA and UblB comprise a five-stranded sheet and two-he ... | Domain | |
| PF04106 | Autophagy protein ATG5, UblB domain (ATG5_UblB) | Autophagy protein ATG5, UblB domain | ATG5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway [1]. ATG5 is conjugated to ATG12; this conjugate exhibits E3 ligase-like activity which facilitates the lipidation of members of the LC3 famil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR045160 | Autophagy-related protein 16 | Family | |
| IPR019775 | WD40 repeat, conserved site | Conserved Site | |
| IPR020472 | PAC1/LIS1-like, WD-40 repeat | Repeat | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR013923 | Autophagy-related protein 16 domain | Domain | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR001680 | WD40 repeat | Repeat | |
| IPR048318 | Autophagy protein ATG5, UblB domain | Domain | |
| IPR007239 | Autophagy-related protein 5 | Family | |
| IPR042526 | Autophagy protein Atg5, helix rich domain | Homologous Superfamily | |
| IPR048939 | Autophagy protein ATG5, UblA domain | Domain | |
| IPR042527 | Autophagy protein Atg5, UblA domain superfamily | Homologous Superfamily | |
| IPR048940 | Autophagy protein ATG5, alpha-helical bundle region | Domain |














