Crystal structure of recombinant foot-and-mouth-disease virus A22-H2093F empty capsid


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068074 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPiezo_RRas_bdge5d8aB1 A: alpha arraysX: TIM beta/alpha-barrelH: Piezo CTL2 domainT: Piezo CTL2 domainF: Piezo_RRas_bdgECOD (v295)
CPiezo_RRas_bdge5d8aC1 A: alpha arraysX: TIM beta/alpha-barrelH: Piezo CTL2 domainT: Piezo CTL2 domainF: Piezo_RRas_bdgECOD (v295)
APiezo_RRas_bdge5d8aA1 A: alpha arraysX: TIM beta/alpha-barrelH: Piezo CTL2 domainT: Piezo CTL2 domainF: Piezo_RRas_bdgECOD (v295)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D4.10.90.10 Few Secondary Structures Irregular Foot-And-Mouth Disease Virus, subunit 4 Capsid protein VP4 superfamily, PicornavirusCATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
VP2
VP4
VP3
VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR004080Foot-and-mouth disease virus VP1 coatDomain
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR004080Foot-and-mouth disease virus VP1 coatDomain
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR004080Foot-and-mouth disease virus VP1 coatDomain
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
IPR008739Peptidase C28, foot-and-mouth virus L-proteinaseDomain
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR004080Foot-and-mouth disease virus VP1 coatDomain
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily