5E6I | pdb_00005e6i

Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
S [auth U]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
I [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
H [auth C]SCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
H [auth C]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
C [auth I]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
C [auth I]SCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
S [auth U]C1-sete5e6iU1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
NC1-sete5e6iN1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
I [auth D]C1-sete5e6iD1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
D [auth J]C1-sete5e6iJ1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
RC1-sete5e6iR1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
MC1-sete5e6iM1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
H [auth C]C1-sete5e6iC1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
C [auth I]C1-sete5e6iI1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
QC1-sete5e6iQ1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
LC1-sete5e6iL1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
G [auth B]C1-sete5e6iB1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
B [auth H]C1-sete5e6iH1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
PC1-sete5e6iP1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
K [auth F]C1-sete5e6iF1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
F [auth A]C1-sete5e6iA1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)
A [auth G]C1-sete5e6iG1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: C1-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
S [auth U]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
N2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
I [auth D]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D [auth J]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
R3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
R2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
M3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
M2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
H [auth C]3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
H [auth C]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C [auth I]3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
C [auth I]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
Q2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
L2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
P2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
K [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth G]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth J],
I [auth D],
N,
S [auth U]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
C [auth I],
H [auth C],
M,
R		PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
C [auth I],
H [auth C],
M,
R		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth K],
J [auth E],
O,
T		Matrix protein 1
D [auth J],
I [auth D],
N,
S [auth U]		Beta-2-microglobulin
C [auth I],
H [auth C],
M,
R		HLA class I histocompatibility antigen, A-2 alpha chain
B [auth H],
G [auth B],
L,
Q		T-cell receptor beta-2 chain C region---
A [auth G],
F [auth A],
K [auth F],
P		TCR alpha chain,Human nkt tcr alpha chain-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth K],
J [auth E],
O,
T		IPR015799Influenza matrix M1, N-terminal subdomain 2Homologous Superfamily
E [auth K],
J [auth E],
O,
T		IPR015423Influenza matrix M1, N-terminal subdomain 1Homologous Superfamily
E [auth K],
J [auth E],
O,
T		IPR036039Influenza virus matrix protein M1Homologous Superfamily
E [auth K],
J [auth E],
O,
T		IPR013188Influenza matrix M1, C-terminalDomain
E [auth K],
J [auth E],
O,
T		IPR001561Influenza matrix M1, N-terminalDomain
E [auth K],
J [auth E],
O,
T		IPR037533Matrix protein 1Family
D [auth J],
I [auth D],
N,
S [auth U]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth J],
I [auth D],
N,
S [auth U]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
D [auth J],
I [auth D],
N,
S [auth U]		IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth J],
I [auth D],
N,
S [auth U]		IPR007110Immunoglobulin-like domainDomain
D [auth J],
I [auth D],
N,
S [auth U]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
D [auth J],
I [auth D],
N,
S [auth U]		IPR003597Immunoglobulin C1-setDomain
D [auth J],
I [auth D],
N,
S [auth U]		IPR015707Beta-2-MicroglobulinFamily
C [auth I],
H [auth C],
M,
R		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth I],
H [auth C],
M,
R		IPR010579MHC class I, alpha chain, C-terminalDomain
C [auth I],
H [auth C],
M,
R		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
C [auth I],
H [auth C],
M,
R		IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
C [auth I],
H [auth C],
M,
R		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
C [auth I],
H [auth C],
M,
R		IPR013783Immunoglobulin-like foldHomologous Superfamily
C [auth I],
H [auth C],
M,
R		IPR007110Immunoglobulin-like domainDomain
C [auth I],
H [auth C],
M,
R		IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
C [auth I],
H [auth C],
M,
R		IPR003597Immunoglobulin C1-setDomain
C [auth I],
H [auth C],
M,
R		IPR011161MHC class I-like antigen recognition-likeDomain
C [auth I],
H [auth C],
M,
R		IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
A [auth G],
F [auth A],
K [auth F],
P		IPR052051T cell receptor complex componentFamily
A [auth G],
F [auth A],
K [auth F],
P		IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth G],
F [auth A],
K [auth F],
P		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth G],
F [auth A],
K [auth F],
P		IPR013106Immunoglobulin V-set domainDomain
A [auth G],
F [auth A],
K [auth F],
P		IPR003599Immunoglobulin domain subtypeDomain
A [auth G],
F [auth A],
K [auth F],
P		IPR007110Immunoglobulin-like domainDomain
A [auth G],
F [auth A],
K [auth F],
P		IPR015370T-cell receptor alpha chain, constant domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
D [auth J],
I [auth D],
N,
S [auth U]		Pharos:  P61769
C [auth I],
H [auth C],
M,
R		Pharos:  P04439