5ESP | pdb_00005esp

Crystal Structure of LAGLIDADG Meganuclease I-PanMI with coordinated Calcium ions

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PK_Tyr_Ser-Thr	e5espB1	A: a/b three-layered sandwiches	X: HTH	H: HUP domains	T: HUP domains	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
A	PK_Tyr_Ser-Thr	e5espA1	A: a/b three-layered sandwiches	X: HTH	H: HUP domains	T: HUP domains	F: PK_Tyr_Ser-Thr	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	CATH (utative)
A	3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00961	LAGLIDADG endonuclease (LAGLIDADG_1)	LAGLIDADG endonuclease		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth H], F [auth D]	DNA (27-MER)	-	-	-
C [auth G], E [auth C]	DNA (27-MER)	-	-	-
A, B	I-PanMI	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051289	LAGLIDADG Homing Endonuclease	Family
A, B	IPR004860	Homing endonuclease, LAGLIDADG domain	Domain
A, B	IPR027434	Homing endonuclease	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.