5F6I | pdb_00005f6i

Crystal Structure of Tier 2 Neutralizing Antibody DH428 from a Rhesus Macaque

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth C]d5f6ic2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Macaca mulatta ) [TaxId: 9544 ], SCOPe (2.08)
B [auth C]d5f6ic1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Macaca mulatta ) [TaxId: 9544 ], SCOPe (2.08)
A [auth B]d5f6ib_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Macaca mulatta ) [TaxId: 9544 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]DEAD, DEAD_2e5f6iC1 A: alpha bundlesX: ACP-likeH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: DEAD, DEAD_2ECOD (develop294)
A [auth B]DEAD, DEAD_2e5f6iB2 A: alpha bundlesX: ACP-likeH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: DEAD, DEAD_2ECOD (develop294)
A [auth B]NTP_transferasee5f6iB3 A: alpha bundlesX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: NTP_transferaseECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth C]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth C]DH428 L-LAMBDA Homo sapiens (human) IGLV2-8*01, IGLV2-8*02, TRAJ40*01, IGLC2*01, IGLC2*02, IGLC3*04 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202610-0)
A [auth B]DH428 VH-CH1 Homo sapiens (human) IGHV3-23*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*03 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth C]Light ChainIGLV2 Lambda-SAbDab (2026-03-20)
A [auth B]Heavy ChainIGHV3 --SAbDab (2026-03-20)