5F7M

Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with blood group H Lewis b hexasaccharide

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd5f7mc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Cd5f7mc2 Artifacts Tags Tags Tags C-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Cd5f7mc3 Artifacts Tags Tags Tags N-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5f7md1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5f7md2 Artifacts Tags Tags Tags C-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5f7md3 Artifacts Tags Tags Tags N-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF08159e5f7mA1 A: alpha bundlesX: SabA N-terminal extracellular adhesion domain (From Topology)H: SabA N-terminal extracellular adhesion domain (From Topology)T: SabA N-terminal extracellular adhesion domainF: EUF08159ECOD (1.6)
BEUF08159e5f7mB1 A: alpha bundlesX: SabA N-terminal extracellular adhesion domain (From Topology)H: SabA N-terminal extracellular adhesion domain (From Topology)T: SabA N-terminal extracellular adhesion domainF: EUF08159ECOD (1.6)
CV-set_8e5f7mC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
DV-set_8e5f7mD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C, D
Heavy ChainIGHV1 -adhesin binding fucosylated histo-blood group antigenSAbDab (2024-12-13)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR040838SabA, N-terminal extracellular adhesion domainDomain
A, B
IPR002718Outer membrane protein, HelicobacterFamily