5FFO | pdb_00005ffo

Integrin alpha V beta 6 in complex with pro-TGF-beta


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilyIntegrin domains 8055305 3002062 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyIntegrin alpha N-terminal domain 8041564 3000314 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyIntegrin alpha N-terminal domain 8041564 3000314 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyIntegrin domains 8055305 3002062 SCOP2B (2022-06-29)
HSCOP2B Superfamilypro-TGF beta-like 8089966 3002405 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCystine-knot cytokines 8038779 3000846 SCOP2B (2022-06-29)
GSCOP2B Superfamilypro-TGF beta-like 8089966 3002405 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCystine-knot cytokines 8038779 3000846 SCOP2B (2022-06-29)
DSCOP2B Superfamilypro-TGF beta-like 8089966 3002405 SCOP2B (2022-06-29)
CSCOP2B Superfamilypro-TGF beta-like 8089966 3002405 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCystine-knot cytokines 8038779 3000846 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EFlav_NS3-hel_Ce5ffoE1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: Flav_NS3-hel_CECOD (v294.1)
AFlav_NS3-hel_Ce5ffoA1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: Flav_NS3-hel_CECOD (v294.1)
FDynamin_Ne5ffoF1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Dynamin_NECOD (v294.1)
BDynamin_Ne5ffoB1 A: a/b three-layered sandwichesX: MocoBD/DmpA-relatedH: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Dynamin_NECOD (v294.1)
HFlav_NS3-hel_Ce5ffoH1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: Flav_NS3-hel_CECOD (v294.1)
GFlav_NS3-hel_Ce5ffoG1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: Flav_NS3-hel_CECOD (v294.1)
DFlav_NS3-hel_Ce5ffoD1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: Flav_NS3-hel_CECOD (v294.1)
CFlav_NS3-hel_Ce5ffoC1 A: a/b three-layered sandwichesX: SH3H: SH3T: SH3F: Flav_NS3-hel_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E
PF01839FG-GAP repeat (FG-GAP)FG-GAP repeat- Repeat
A, E
PF08441Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1)Integrin alpha Ig-like domain 1This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. Domain
C, D, G, H
PF00688TGF-beta propeptide (TGFb_propeptide)TGF-beta propeptide- Family
C, D, G, H
PF00019Transforming growth factor beta like domain (TGF_beta)Transforming growth factor beta like domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Integrin alpha-V
B, F
Integrin beta-6
C, D, G, H
Transforming growth factor beta-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR013517FG-GAP repeatRepeat
A, E
IPR048286Integrin alpha, third immunoglobulin-like domainDomain
A, E
IPR013649Integrin alpha, first immunoglubulin-like domainDomain
A, E
IPR048285Integrin alpha, second immunoglobulin-like domainDomain
A, E
IPR032695Integrin domain superfamilyHomologous Superfamily
A, E
IPR013519Integrin alpha beta-propellorRepeat
A, E
IPR000413Integrin alpha chainFamily
A, E
IPR028994Integrin alpha, N-terminalHomologous Superfamily
A, E
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved siteConserved Site
B, F
IPR033760Integrin beta N-terminalDomain
B, F
IPR015812Integrin beta subunitFamily
B, F
IPR036349Integrin beta tail domain superfamilyHomologous Superfamily
B, F
IPR057243Integrins beta, I-EGF domain, conserved siteConserved Site
B, F
IPR002369Integrin beta subunit, VWA domainDomain
B, F
IPR014836Integrin beta subunit, cytoplasmic domainDomain
B, F
IPR016201PSI domainDomain
B, F
IPR040622Integrin beta, epidermal growth factor-like domain 1Domain
B, F
IPR012896Integrin beta subunit, tailDomain
B, F
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
B, F
IPR013111Epidermal growth factor-like domain, extracellularDomain
B, F
IPR057073Integrin beta, epidermal growth factor-like domain 2Domain
B, F
IPR032695Integrin domain superfamilyHomologous Superfamily
C, D, G, H
IPR003939Transforming growth factor beta-1 proproteinFamily
C, D, G, H
IPR029034Cystine-knot cytokineHomologous Superfamily
C, D, G, H
IPR015615Transforming growth factor-beta-likeFamily
C, D, G, H
IPR001839Transforming growth factor-beta, C-terminalDomain
C, D, G, H
IPR016319Transforming growth factor-betaFamily
C, D, G, H
IPR017948Transforming growth factor beta, conserved siteConserved Site
C, D, G, H
IPR001111TGF-beta, propeptideDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
PharosP06756
B, F
PharosP18564
C, D, G, H
PharosP01137