5H10 | pdb_00005h10

TRAF1-TANk complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	TRAF domain-like	8089590	3001027	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trimerization domain of TRAF	8090577	3001589	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TRAF domain-like	8089590	3001027	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trimerization domain of TRAF	8090577	3001589	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trimerization domain of TRAF	8090577	3001589	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TRAF domain-like	8089590	3001027	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C		e5h10C1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: Peptidase_S26	F:	ECOD (20:10:01)
B		e5h10B1	A: PriB N-terminal domain-like	X: Rubredoxin-related	H: Aconitase iron-sulfur domain	T: zf-B_box	F:	ECOD (20:10:01)
A		e5h10A1	A: L-aspartase middle domain-like	X: L-aspartase middle domain-like	H: L-aspartase middle domain-like	T: TRAF-mep_MATH	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)
B	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)
A	2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF21355	TRAF/meprin, MATH domain (TRAF-mep_MATH)	TRAF/meprin, MATH domain	Intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the the meprin and TRAF homology (MATH) domain which adopts a beta-sandwich structure. This is the MATH domain of TNF receptor-associated factors (TRAFs) an ...	Intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the the meprin and TRAF homology (MATH) domain which adopts a beta-sandwich structure. This is the MATH domain of TNF receptor-associated factors (TRAFs) and meprins. In TRAFS, it is essential for self-association and receptor interaction [1-3]. Meprins are mammalian tissue-specific metalloendopeptidases involved developmental, normal and pathological processes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E, F	TRAF family member-associated NF-kappaB activator	molecular function inhibitor activity molecular function regulator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity deubiquitinase activator activity peptidase activator activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding molecular function inhibitor activity molecular function regulator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity deubiquitinase activator activity peptidase activator activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction negative regulation of cell communication negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus protein deubiquitination regulation of protein modification process positive regulation of protein metabolic process positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein modification by small protein removal positive regulation of macromolecule metabolic process protein metabolic process protein modification process regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process positive regulation of protein deubiquitination primary metabolic process regulation of macromolecule metabolic process regulation of protein deubiquitination macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation or removal response to peptide cellular response to tumor necrosis factor response to chemical response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor regulation of catalytic activity positive regulation of peptidase activity positive regulation of molecular function regulation of proteolysis proteolysis positive regulation of ubiquitin-specific protease activity regulation of peptidase activity positive regulation of catalytic activity regulation of molecular function positive regulation of hydrolase activity regulation of hydrolase activity positive regulation of proteolysis biological process involved in interspecies interaction between organisms defense response to virus defense response response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus multicellular organismal process positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process regulation of biosynthetic process positive regulation of type I interferon production type I interferon production gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production regulation of type I interferon production cellular response to interleukin-1 response to interleukin-1 cytokine-mediated signaling pathway tumor necrosis factor-mediated signaling pathway cell surface receptor signaling pathway regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway negative regulation of tumor necrosis factor-mediated signaling pathway regulation of response to cytokine stimulus negative regulation of response to cytokine stimulus negative regulation of cytokine-mediated signaling pathway interferon-mediated signaling pathway cellular response to type I interferon innate immune response immune response defense response to symbiont immune system process defense response to other organism type I interferon-mediated signaling pathway response to type I interferon	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein kinase complex transferase complex, transferring phosphorus-containing groups catalytic complex serine/threonine protein kinase complex transferase complex
A, B, C	TNF receptor-associated factor 1	protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding thioesterase binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding thioesterase binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding identical protein binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus signal transduction response to tumor necrosis factor apoptotic process cell death programmed cell death regulation of signal transduction regulation of programmed cell death extrinsic apoptotic signaling pathway regulation of signaling regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway intracellular signal transduction canonical NF-kappaB signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of canonical NF-kappaB signal transduction	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E, F	IPR039669	TRAF family member-associated NF-kappa-B activator	Family
D, E, F	IPR024581	Tbk1/Ikki binding domain	Domain
D, E, F	IPR041641	CALCOCO1/2, zinc finger UBZ1-type	Domain
A, B, C	IPR049342	TRAF1-6, MATH domain	Domain
A, B, C	IPR037306	TNF receptor-associated factor 1, MATH domain	Domain
A, B, C	IPR012227	TNF receptor-associated factor TRAF, metazoa	Family
A, B, C	IPR032070	TNF receptor-associated factor, BIRC3 binding domain	Domain
A, B, C	IPR008974	TRAF-like	Homologous Superfamily
A, B, C	IPR002083	MATH/TRAF domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D, E, F	Pharos: Q92844	breast carcinoma breast cancer pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type Gaucher disease juvenile dermatomyositis malignant glioma Mammary Neoplasms, Human osteosarcoma psoriasis atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma medulloblastoma breast carcinoma breast cancer pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type Gaucher disease juvenile dermatomyositis malignant glioma Mammary Neoplasms, Human osteosarcoma psoriasis atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer Sjogren syndrome endogenous depression hypothyroidism lung cancer myopathy
A, B, C	Pharos: Q13077	rheumatoid arthritis patent ductus arteriosus juvenile idiopathic arthritis prostate cancer Abortion, Spontaneous alopecia areata ulcerative colitis glioblastoma osteosarcoma allergic rhinitis interstitial cystitis tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.