5HY7 | pdb_00005hy7

SF3B10-SF3B130 from Chaetomium thermophilum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DDB1-like	8044840	4004169	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	WD40 repeat-like	8051195	3001694	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	WD40 repeat-like	8052532	3001694	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	WD40 repeat-like	8052533	3001694	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	WD40 repeat-like	8051195	3001694	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	WD40 repeat-like	8052532	3001694	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	WD40 repeat-like	8052532	3001694	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	WD40 repeat-like	8052533	3001694	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]		e5hy7C1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: CagX	F:	ECOD (20:10:01)
A		e5hy7A1	A: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: HTH_3	F:	ECOD (20:10:01)
C [auth B]		e5hy7B1	A: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: HTH_3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth B]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF10433	RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)	RSE1/DDB1/CPSF1 first beta-propeller	-	Repeat
A, C [auth B]	PF23726	RSE1/DDB1/CPSF1 second beta-propeller (Beta-prop_RSE1_2nd)	RSE1/DDB1/CPSF1 second beta-propeller	-	Repeat
A, C [auth B]	PF03178	CPSF A subunit region (CPSF_A)	CPSF A subunit region	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth D], D [auth C]	YSF3	-	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process RNA processing	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex precatalytic spliceosome spliceosomal snRNP complex Sm-like protein family complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex precatalytic spliceosome spliceosomal snRNP complex Sm-like protein family complex small nuclear ribonucleoprotein complex U2 snRNP
A, C [auth B]	Putative pre-mRNA splicing protein	binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process mRNA processing mRNA metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D], D [auth C]	IPR017089	Splicing factor 3B, subunit 5	Family
B [auth D], D [auth C]	IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	Family
A, C [auth B]	IPR050358	RSE1/DDB1/CPSF1	Family
A, C [auth B]	IPR018846	RSE1/DDB1/CPSF1, first beta-propeller	Domain
A, C [auth B]	IPR058543	RSE1/DDB1/CPSF1, second beta-propeller	Domain
A, C [auth B]	IPR004871	RSE1/DDB1/CPSF1, C-terminal	Domain
A, C [auth B]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C [auth B]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.