5I8U | pdb_00005i8u

Crystal Structure of the RV1700 (MT ADPRASE) E142Q mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G [auth F]	d5i8uf_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
F [auth E]	d5i8ue_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
E [auth D]	d5i8ud_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
D [auth C]	d5i8uc_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
C [auth B]	d5i8ub_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
B [auth A]	d5i8ua_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
A [auth G]	d5i8ug_	Alpha and beta proteins (a+b)	Nudix	Nudix	MutT-like	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth F]	SCOP2B Superfamily	Nudix	8101455	3000098	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Nudix	8101455	3000098	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Nudix	8101455	3000098	SCOP2B (2022-06-29)
D [auth C]	SCOP2 Family	MutT-like	8101454	4001887	SCOP2 (2022-06-29)
D [auth C]	SCOP2 Superfamily	Nudix	8101455	3000098	SCOP2 (2022-06-29)
C [auth B]	SCOP2B Superfamily	Nudix	8101455	3000098	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Nudix	8101455	3000098	SCOP2B (2022-06-29)
A [auth G]	SCOP2B Superfamily	Nudix	8101455	3000098	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth F]	NUDIX_1	e5i8uF1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)
F [auth E]	NUDIX_1	e5i8uE1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)
E [auth D]	NUDIX_1	e5i8uD1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)
D [auth C]	NUDIX_1	e5i8uC1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)
C [auth B]	NUDIX_1	e5i8uB1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)
B [auth A]	NUDIX_1	e5i8uA1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)
A [auth G]	NUDIX_1	e5i8uG1	A: a+b two layers	X: beta-Grasp	H: Nudix (From Topology)	T: Nudix	F: NUDIX_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth F]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)
F [auth E]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)
E [auth D]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)
D [auth C]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)
C [auth B]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)
B [auth A]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)
A [auth G]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	PF00293	NUDIX domain (NUDIX)	NUDIX domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	ADP-ribose pyrophosphatase	pyrophosphatase activity 8-oxo-GDP phosphatase activity nucleoside diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ADP-ribose diphosphatase activity cation binding ion binding binding metal ion binding small molecule binding 8-oxo-dGDP phosphatase activity	ribose phosphate metabolic process organophosphate metabolic process phosphate-containing compound metabolic process carbohydrate derivative metabolic process metabolic process cellular process phosphorus metabolic process nucleobase-containing compound metabolic process DNA replication primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process nucleoside phosphate metabolic process ribose phosphate metabolic process organophosphate metabolic process phosphate-containing compound metabolic process carbohydrate derivative metabolic process metabolic process cellular process phosphorus metabolic process nucleobase-containing compound metabolic process DNA replication primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process nucleoside phosphate metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	IPR000086	NUDIX hydrolase domain	Domain
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	IPR015797	NUDIX hydrolase-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.