5ICN
HDAC1:MTA1 in complex with inositol-6-phosphate and a novel peptide inhibitor based on histone H4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | UBA-like | 8102939 | 3001235 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Homeodomain-like | 8102941 | 3000001 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Myb_DNA-binding_3 | e5icnA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
A | KOG3554 | e5icnA2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: KOG3554 | ECOD (1.6) |
B | Hist_deacetyl | e5icnB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
B | 3.40.800.20 | Alpha Beta | 3-Layer(aba) Sandwich | Arginase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01448 | ELM2 domain (ELM2) | ELM2 domain | - | Family | |
PF00249 | Myb-like DNA-binding domain (Myb_DNA-binding) | Myb-like DNA-binding domain | This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. | Domain | |
PF00850 | Histone deacetylase domain (Hist_deacetyl) | Histone deacetylase domain | Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001025 | Bromo adjacent homology (BAH) domain | Domain | |
IPR000679 | Zinc finger, GATA-type | Domain | |
IPR000949 | ELM2 domain | Domain | |
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR043151 | Bromo adjacent homology (BAH) domain superfamily | Homologous Superfamily | |
IPR017884 | SANT domain | Domain | |
IPR001005 | SANT/Myb domain | Domain | |
IPR035170 | Metastasis-associated protein MTA1, R1 domain | Domain | |
IPR040138 | Mesoderm induction early response protein/metastasis-associated protein | Family | |
IPR000286 | Histone deacetylase family | Family | |
IPR023801 | Histone deacetylase domain | Domain | |
IPR003084 | Histone deacetylase | Family | |
IPR050284 | Histone deacetylase and polyamine deacetylase | Family | |
IPR037138 | Histone deacetylase domain superfamily | Homologous Superfamily | |
IPR023696 | Ureohydrolase domain superfamily | Homologous Superfamily |