5J7Y | pdb_00005j7y

Architecture of loose respirasome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AC [auth BC]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8068973 3000671 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
KC [auth BM]HMAe5j7yBM1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
JC [auth BL]HMAe5j7yBL1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
IC [auth BK]HMAe5j7yBK1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
HC [auth BJ]HMAe5j7yBJ1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
GC [auth BI]HMAe5j7yBI1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
FC [auth BH]HMAe5j7yBH1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
EC [auth BG]HMAe5j7yBG1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
DC [auth BP]HMAe5j7yBP1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
CC [auth BE]HMAe5j7yBE1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
BC [auth BD]HMAe5j7yBD1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
AC [auth BC]HMAe5j7yBC1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
ZB [auth BO]HMAe5j7yBO1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
YB [auth BN]HMAe5j7yBN1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
XB [auth AV]HMAe5j7yAV1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
MB [auth AK]HMAe5j7yAK1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
WB [auth AU]HMAe5j7yAU1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
LB [auth AJ]HMAe5j7yAJ1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
VB [auth AT]HMAe5j7yAT1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
KB [auth AI]HMAe5j7yAI1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
UB [auth AS]HMAe5j7yAS1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
JB [auth AH]HMAe5j7yAH1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
TB [auth AR]HMAe5j7yAR1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
IB [auth AG]HMAe5j7yAG1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
SB [auth AQ]HMAe5j7yAQ1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
HB [auth AF]HMAe5j7yAF1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
RB [auth AP]HMAe5j7yAP2 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
RB [auth AP]e5j7yAP3 A: alpha bundlesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF:ECOD (develop294)
GB [auth AE]HMAe5j7yAE1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
GB [auth AE]e5j7yAE2 A: alpha bundlesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF:ECOD (develop294)
QB [auth AO]HMAe5j7yAO1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
FB [auth AD]HMAe5j7yAD1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
PB [auth AN]HMAe5j7yAN1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
EB [auth AC]HMAe5j7yAC1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
OB [auth AM]HMAe5j7yAM1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
DB [auth AB]HMAe5j7yAB1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
NB [auth AL]HMAe5j7yAL1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)
CB [auth AA]HMAe5j7yAA1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HMAECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
AC [auth BC]PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
ZB [auth BO]PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
ZB [auth BO]PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
YB [auth BN]PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
EB [auth AC],
PB [auth AN]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
EB [auth AC],
PB [auth AN]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
COMPLEX I TYKY/NDUFS8---
COMPLEX I ND1---
KC [auth BM]COMPLEX IV COX8B---
JC [auth BL]COMPLEX IV COX7C---
IC [auth BK]COMPLEX IV COX7B---
HC [auth BJ]Cytochrome c oxidase subunit 7A1, mitochondrial---
GC [auth BI]COMPLEX IV COX6C---
COMPLEX I 75KDA/NDUFS1---
FC [auth BH]COMPLEX IV COX6B1---
EC [auth BG]Cytochrome c oxidase subunit 6A, mitochondrial---
DC [auth BP]COMPLEX IV COX5B---
CC [auth BE]COMPLEX IV COX5A---
BC [auth BD]COMPLEX IV COX4---
AC [auth BC]Cytochrome c oxidase subunit 3
ZB [auth BO]Cytochrome c oxidase subunit 2
YB [auth BN]Cytochrome c oxidase subunit 1
MB [auth AK],
XB [auth AV]
COMPLEX III SUBUNIT 10 / 6.4KDA---
LB [auth AJ],
WB [auth AU]
COMPLEX III SUBUNIT 9 / 7.2KDA---
COMPLEX I 51KDA/NDUFV1---
KB [auth AI],
VB [auth AT]
Cytochrome b-c1 complex subunit Rieske, mitochondrial---
JB [auth AH],
UB [auth AS]
Cytochrome b-c1 complex subunit 6---
IB [auth AG],
TB [auth AR]
COMPLEX III SUBUNIT 8 / QP-C---
HB [auth AF],
SB [auth AQ]
COMPLEX III SUBUNIT 7 / 14KDA---
GB [auth AE],
RB [auth AP]
Cytochrome b-c1 complex subunit Rieske, mitochondrial---
FB [auth AD],
QB [auth AO]
COMPLEX III SUBUNIT 4 / CYTOCHROME C1---
EB [auth AC],
PB [auth AN]
Cytochrome b
DB [auth AB],
OB [auth AM]
COMPLEX III SUBUNIT 2 / CORE 2---
CB [auth AA],
NB [auth AL]
COMPLEX III SUBUNIT 1 / CORE 1---
BB [auth t]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 16---
COMPLEX I 24KDA/NDUFV2---
AB [auth u]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 15---
ZA [auth v]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 14---
YA [auth w]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 13---
XA [auth x]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 12---
WA [auth y]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 11---
TA [auth 8]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 6---
SA [auth 7]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 5---
RA [auth 6]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 4---
QA [auth 5]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 3---
OA [auth 3],
PA [auth 4]
COMPLEX I UNKNOWN SUBUNIT FRAGMENT 2---
COMPLEX I 49KDA/NDUFS2---
NA [auth 2]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 1---
MA [auth 1]COMPLEX I B14.5B/NDUFC2---
LA [auth 0]COMPLEX I KFYI/NDUFC1---
KA [auth k]COMPLEX I ESSS/NDUFB11---
JA [auth j]COMPLEX I PDSW/NDUFB10---
IA [auth i]COMPLEX I B22/NDUFB9---
HA [auth h],
UA [auth 9],
VA [auth z]
COMPLEX I B18/NDUFB7---
GA [auth g]COMPLEX I B15/NDUFB4---
FA [auth f]COMPLEX I SDAP/NDUFAB1---
EA [auth e]COMPLEX I SDAP/NDUFAB1---
COMPLEX I 30KDA/NDUFS3---
CA [auth c]COMPLEX I SDAP/NDUFAB1---
BA [auth b]COMPLEX I B16.6/NDUFA13---
AA [auth a]COMPLEX I B17.2/NDUFA12---
COMPLEX I B14.7/NDUFA11---
COMPLEX I 42KDA/NDUFA10---
COMPLEX I 39KDA/NDUFA9---
COMPLEX I PGIV/NDUFA8---
COMPLEX I B14/NDUFA6---
COMPLEX I B13/NDUFA5---
COMPLEX I B9/NDUFA3---
COMPLEX I PSST/NDUFS7---
DA [auth d],
S
COMPLEX I B8/NDUFA2---
COMPLEX I MWFE/NDUFA1---
COMPLEX I 15KDA/NDUFS5---
COMPLEX I 13KDA/NDUFS6---
COMPLEX I 18KDA/NDUFS6---
COMPLEX I ND2---
COMPLEX I ND4---
COMPLEX I ND5---
COMPLEX I ND4L---
COMPLEX I ND6---
COMPLEX I ND3---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
AC [auth BC]IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
AC [auth BC]IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
AC [auth BC]IPR000298Cytochrome c oxidase subunit III-likeDomain
AC [auth BC]IPR033945Cytochrome c oxidase subunit III domainDomain
AC [auth BC]IPR024791Cytochrome c oxidase subunit IIIFamily
ZB [auth BO]IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
ZB [auth BO]IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
ZB [auth BO]IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
ZB [auth BO]IPR045187Cytochrome c/quinol oxidase subunit IIFamily
ZB [auth BO]IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
ZB [auth BO]IPR008972CupredoxinHomologous Superfamily
ZB [auth BO]IPR014222Cytochrome c oxidase, subunit IIDomain
YB [auth BN]IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
YB [auth BN]IPR000883Cytochrome c oxidase subunit IFamily
YB [auth BN]IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
YB [auth BN]IPR023616Cytochrome c oxidase-like, subunit I domainDomain
YB [auth BN]IPR033944Cytochrome c oxidase subunit I domainDomain
EB [auth AC],
PB [auth AN]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
EB [auth AC],
PB [auth AN]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
EB [auth AC],
PB [auth AN]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
EB [auth AC],
PB [auth AN]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
EB [auth AC],
PB [auth AN]
IPR005798Cytochrome b/b6, C-terminalDomain
EB [auth AC],
PB [auth AN]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
EB [auth AC],
PB [auth AN]
IPR030689Cytochrome bFamily
EB [auth AC],
PB [auth AN]
IPR005797Cytochrome b/b6, N-terminal domainDomain