5JUY | pdb_00005juy

Active human apoptosome with procaspase-9


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
RSCOP2B SuperfamilyDEATH domain 8037989 3000069 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyDEATH domain 8037989 3000069 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyDEATH domain 8037989 3000069 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyDEATH domain 8037989 3000069 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCytochrome c 8068519 3000815 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDEATH domain 8037979 3000069 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDEATH domain 8037979 3000069 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDEATH domain 8037979 3000069 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDEATH domain 8037979 3000069 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
RCohesine5juyR1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
QCohesine5juyQ1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
PCohesine5juyP1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
OCohesine5juyO1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
NCohesine5juyN1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
MCohesine5juyM1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
LCohesine5juyL1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
KCohesine5juyK1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
JCohesine5juyJ1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
ICohesine5juyI1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
HCohesine5juyH1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
GCohesine5juyG3 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
GMORF_dome5juyG8 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)
FCohesine5juyF1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
FMORF_dome5juyF6 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)
ECohesine5juyE3 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
EMORF_dome5juyE8 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)
DCohesine5juyD3 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
DMORF_dome5juyD8 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)
CCohesine5juyC1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
CMORF_dome5juyC6 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)
BCohesine5juyB3 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
BMORF_dome5juyB8 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)
ACohesine5juyA1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: CohesinECOD (v294.1)
AMORF_dome5juyA5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: MORF_domECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O, P, Q, R
PF00619Caspase recruitment domain (CARD)Caspase recruitment domainMotif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . Domain
H, I, J, K, L
PF00034Cytochrome c (Cytochrom_C)Cytochrome cThe Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. Domain
A, B, C, D, E
PF00931NB-ARC domain (NB-ARC)NB-ARC domainDomain
A, B, C, D, E
PF17908APAF-1 helical domain (APAF1_C)APAF-1 helical domainThis domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein. Domain
A, B, C, D, E
PF21296Apoptotic protease-activating factor 1-like, winged-helix domain (WHD_APAF1)Apoptotic protease-activating factor 1-like, winged-helix domainThis domain is found in Apoptotic protease-activating factor 1 from Mus musculus (APAF-1), responsible to ignite the downstream cascade of caspases in the mitochondrial pathway of apoptosis. This entry represents the winged-helix domain (WHD) [1-5]. ...This domain is found in Apoptotic protease-activating factor 1 from Mus musculus (APAF-1), responsible to ignite the downstream cascade of caspases in the mitochondrial pathway of apoptosis. This entry represents the winged-helix domain (WHD) [1-5].
Domain
A, B, C, D, E
PF00619Caspase recruitment domain (CARD)Caspase recruitment domainMotif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . Domain
A, B, C, D, E
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
O, P, Q, R
Caspase-9
H, I, J, K, L
Cytochrome c
A, B, C, D, E
Apoptotic protease-activating factor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
O, P, Q, R
IPR029030Caspase-like domain superfamilyHomologous Superfamily
O, P, Q, R
IPR001309Peptidase C14, p20 domainDomain
O, P, Q, R
IPR011600Peptidase C14, caspase domainDomain
O, P, Q, R
IPR016129Peptidase family C14A, His active siteActive Site
O, P, Q, R
IPR042147CASP9, CARD domainDomain
O, P, Q, R
IPR015917Peptidase C14A, caspase catalytic domainDomain
O, P, Q, R
IPR011029Death-like domain superfamilyHomologous Superfamily
O, P, Q, R
IPR033139Peptidase family C14A, cysteine active siteActive Site
O, P, Q, R
IPR002138Peptidase C14, caspase non-catalytic subunit p10Domain
O, P, Q, R
IPR001315CARD domainDomain
O, P, Q, R
IPR002398Peptidase C14 familyFamily
H, I, J, K, L
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
H, I, J, K, L
IPR009056Cytochrome c-like domainDomain
H, I, J, K, L
IPR002327Cytochrome c, class IA/ IBFamily
A, B, C, D, E
IPR041452APAF-1 helical domainDomain
A, B, C, D, E
IPR019775WD40 repeat, conserved siteConserved Site
A, B, C, D, E
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A, B, C, D, E
IPR037963Apoptotic Protease-Activating Factor 1, CARD domainDomain
A, B, C, D, E
IPR002182NB-ARCDomain
A, B, C, D, E
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR042197Apoptotic protease-activating factors, helical domainHomologous Superfamily
A, B, C, D, E
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR048975Apoptotic protease-activating factor 1, winged-helix domainDomain
A, B, C, D, E
IPR001680WD40 repeatRepeat
A, B, C, D, E
IPR001315CARD domainDomain
A, B, C, D, E
IPR017251Apoptotic protease-activating factor 1Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
O, P, Q, R
PharosP55211
A, B, C, D, E
PharosO14727